RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TOPORSQ9NS56 1045 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 STK17AQ9UEE5 414 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 FBXO2Q9UK22 296 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 SSX2IPQ9Y2D8 614 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 GDAQ9Y2T3 454 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 ATP6V1DQ9Y5K8 247 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 PRRC2BQ5JSZ5 2229 aaKnown RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 COL4A4P53420 1690 aaPredicted RBP11.96□□□□□ -0.5
CLIP3-203ENST00000586457 FNDC1Q4ZHG4 1894 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 NPHP3-ACAD11A0A0J9YXS1 232 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 TULP1O00294 542 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 PER2O15055 1255 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 TADA2AO75478 443 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 F13A1P00488 732 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 THP07101 528 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 GALTP07902 379 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 DNAJB1P25685 340 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ME1P48163 572 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 SCNN1GP51170 649 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 KCNQ1P51787 676 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ERVFC1P60507 584 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 CACNB1Q02641 598 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 GRIN1Q05586 938 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 HYAL1Q12794 435 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ZNF568Q3ZCX4 644 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ZBTB33Q86T24 672 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 DDX53Q86TM3 631 aaKnown RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ZNF280BQ86YH2 543 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 FAM178BQ8IXR5 827 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 VPS52Q8N1B4 723 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ADAMTS19Q8TE59 1207 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 IGSF21Q96ID5 467 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 ZFP42Q96MM3 310 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 NTPCRQ9BSD7 190 aaKnown RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 CCDC113Q9H0I3 377 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 RNF39Q9H2S5 420 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 SNTG2Q9NY99 539 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 DNAJB4Q9UDY4 337 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 TNFSF13BQ9Y275 285 aa11.95□□□□□ -0.5
CLIP3-203ENST00000586457 PRG3Q9Y2Y8 225 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-203ENST00000586457 H3BQ06 376 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 NRP1O14786 923 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 CLDN3O15551 220 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 TRAK2O60296 914 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 CUTAO60888 179 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 PPP6R2O75170 966 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 DDHD2O94830 711 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 YEATS4O95619 227 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 HARSP12081 509 aaKnown RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 IRS1P35568 1242 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 SLC11A1P49279 550 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 NASPP49321 788 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 LIG4P49917 911 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 AMPD3Q01432 767 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 GRIK3Q13003 919 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 LEXMQ3ZCV2 418 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 PTCRAQ6ISU1 281 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 ELMSAN1Q6PJG2 1045 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 HAUS6Q7Z4H7 955 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 EFHBQ8N7U6 833 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 PDILTQ8N807 584 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 LINC00301Q8NCQ3 95 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 KCNG4Q8TDN1 519 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 UHRF1Q96T88 793 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 ACO2Q99798 780 aaKnown RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 REEP2Q9BRK0 252 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 COL25A1Q9BXS0 654 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-203ENST00000586457 EMILIN2Q9BXX0 1053 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 FAM13BQ9NYF5 915 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 ANKFY1Q9P2R3 1169 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 USP20Q9Y2K6 914 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 CDH23Q9H251 3354 aa11.94□□□□□ -0.5
CLIP3-203ENST00000586457 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-203ENST00000586457 K7ENM7 598 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 MCF2P10911 925 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 IDEP14735 1019 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 OSTNP61366 133 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 ADAM15Q13444 863 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 CAMK1Q14012 370 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 CLUL1Q15846 466 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 ARSHQ5FYA8 562 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 NT5DC1Q5TFE4 455 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 LLGL2Q6P1M3 1020 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 MPZL3Q6UWV2 235 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 DYMQ7RTS9 669 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 DAW1Q8N136 415 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 MRPL43Q8N983 215 aaKnown RBP11.93□□□□□ -0.5
CLIP3-203ENST00000586457 ACAP3Q96P50 834 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 TARS2Q9BW92 718 aaKnown RBP11.93□□□□□ -0.5
CLIP3-203ENST00000586457 MRPL17Q9NRX2 175 aaKnown RBP11.93□□□□□ -0.5
CLIP3-203ENST00000586457 ARHGAP28Q9P2N2 729 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 CD207Q9UJ71 328 aa11.93□□□□□ -0.5
CLIP3-203ENST00000586457 HNRNPDLO14979 420 aaKnown RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 TOM1L1O75674 476 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 RECQL4O94761 1208 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 URODP06132 367 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 MAPTP10636 758 aaKnown RBP11.92□□□□□ -0.5
CLIP3-203ENST00000586457 BMP1P13497 986 aa11.92□□□□□ -0.5
CLIP3-203ENST00000586457 KLRC2P26717 231 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms