RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 MSTO1Q9BUK6 570 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 NOC4LQ9BVI4 516 aaKnown RBP17.61■□□□□ 0.41
SS18-211ENST00000578954 PCIF1Q9H4Z3 704 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 ERVK-5Q9HDB9 667 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 ANKFY1Q9P2R3 1169 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 TBX21Q9UL17 535 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 FRMD4BQ9Y2L6 1034 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 A0A1B0GTH6 734 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 OGTO15294 1046 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 RPS6KA5O75582 802 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 ADRB2P07550 413 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 NCBP1Q09161 790 aaKnown RBP17.6■□□□□ 0.41
SS18-211ENST00000578954 LPIN1Q14693 890 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 MBTPS1Q14703 1052 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 LRRC26Q2I0M4 334 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 DCAF4L1Q3SXM0 396 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 ZNF568Q3ZCX4 644 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 CCDC40Q4G0X9 1142 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 NOTUMQ6P988 496 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 CRELD2Q6UXH1 353 aaPredicted RBP17.6■□□□□ 0.41
SS18-211ENST00000578954 LRRC8DQ7L1W4 858 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 ZSWIM2Q8NEG5 633 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 CPB2Q96IY4 423 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 AGO3Q9H9G7 860 aaKnown RBP17.6■□□□□ 0.41
SS18-211ENST00000578954 ARMCX3Q9UH62 379 aaPredicted RBP17.6■□□□□ 0.41
SS18-211ENST00000578954 TANC1Q9C0D5 1861 aa17.6■□□□□ 0.41
SS18-211ENST00000578954 GPR182O15218 404 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 EN2P19622 333 aaPredicted RBP17.59■□□□□ 0.41
SS18-211ENST00000578954 COPB1P53618 953 aaKnown RBP17.59■□□□□ 0.41
SS18-211ENST00000578954 PPP2R3AQ06190 1150 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 SNRNP35Q16560 246 aaKnown RBP17.59■□□□□ 0.41
SS18-211ENST00000578954 MAN2A1Q16706 1144 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 KYAT1Q16773 422 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 INTS8Q75QN2 995 aaKnown RBP17.59■□□□□ 0.41
SS18-211ENST00000578954 CBWD2Q8IUF1 395 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 SAAL1Q96ER3 474 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 MFSD14AQ96MC6 490 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 TUBGCP2Q9BSJ2 902 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 CHST12Q9NRB3 414 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 ST3GAL5Q9UNP4 418 aa17.59■□□□□ 0.41
SS18-211ENST00000578954 GOLGA8IPA6NC78 632 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 GOLGA8JA6NMD2 632 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 PARNO95453 639 aaKnown RBP17.58■□□□□ 0.4
SS18-211ENST00000578954 SERPINC1P01008 464 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 GHRP10912 638 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 MTIF2P46199 727 aaKnown RBP17.58■□□□□ 0.4
SS18-211ENST00000578954 CYP24A1Q07973 514 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 BFSP1Q12934 665 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 TMEM132AQ24JP5 1023 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 MIIPQ5JXC2 388 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 UBXN11Q5T124 520 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 SLC27A1Q6PCB7 646 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 APBB1IPQ7Z5R6 666 aaPredicted RBP17.58■□□□□ 0.4
SS18-211ENST00000578954 BRSK2Q8IWQ3 736 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 TMC2Q8TDI7 906 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 ADPGKQ9BRR6 497 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 FAM213AQ9BRX8 229 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 TCHPQ9BT92 498 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 TRAIPQ9BWF2 469 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 OSBPL7Q9BZF2 842 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 RTN4Q9NQC3 1192 aaKnown RBP17.58■□□□□ 0.4
SS18-211ENST00000578954 INTS13Q9NVM9 706 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 TAB2Q9NYJ8 693 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 CPSF3Q9UKF6 684 aaKnown RBP17.58■□□□□ 0.4
SS18-211ENST00000578954 PIN4Q9Y237 131 aaKnown RBP17.58■□□□□ 0.4
SS18-211ENST00000578954 DNAH12Q6ZR08 3092 aa17.58■□□□□ 0.4
SS18-211ENST00000578954 ZNF233A6NK53 670 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 LGALS16A8MUM7 142 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 CBFA2T2O43439 604 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 PRKCSHP14314 528 aaPredicted RBP17.57■□□□□ 0.4
SS18-211ENST00000578954 MATR3P43243 847 aaKnown RBP eCLIP17.57■□□□□ 0.4
SS18-211ENST00000578954 ZNF75DP51815 510 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 UBASH3AP57075 661 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 PAK2Q13177 524 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 DSC3Q14574 896 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 GPNMBQ14956 572 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 ZBTB41Q5SVQ8 909 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 ZBTB33Q86T24 672 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 CDR2LQ86X02 465 aaPredicted RBP17.57■□□□□ 0.4
SS18-211ENST00000578954 PLEKHO2Q8TD55 490 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 SLC35C1Q96A29 364 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 MRFAP1L1Q96HT8 127 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 NAP1L5Q96NT1 182 aaPredicted RBP17.57■□□□□ 0.4
SS18-211ENST00000578954 XPO4Q9C0E2 1151 aaKnown RBP17.57■□□□□ 0.4
SS18-211ENST00000578954 HIPK3Q9H422 1215 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 IFNKQ9P0W0 207 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 PADI3Q9ULW8 664 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 ATP11BQ9Y2G3 1177 aa17.57■□□□□ 0.4
SS18-211ENST00000578954 CLTAP09496 248 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 CLTBP09497 229 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 CD52P31358 61 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 GRM5P41594 1212 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 CLDN10P78369 228 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 NR1I3Q14994 352 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 PSMD6Q15008 389 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 FILIP1LQ4L180 1135 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 VWA3BQ502W6 1294 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 PARD3BQ8TEW8 1205 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 TRIM5Q9C035 493 aa17.56■□□□□ 0.4
SS18-211ENST00000578954 WNT8AQ9H1J5 351 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms