RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KNOP1Q1ED39 458 aaKnown RBP10.18□□□□□ -0.78
VPS35-211ENST00000569950 SEZ6Q53EL9 994 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 CLLU1OSQ5K130 101 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 CENPPQ6IPU0 288 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 NOTUMQ6P988 496 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 SLC27A1Q6PCB7 646 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 PSRC1Q6PGN9 363 aaPredicted RBP10.18□□□□□ -0.78
VPS35-211ENST00000569950 MPZL3Q6UWV2 235 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 SLC24A5Q71RS6 500 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 NELFCDQ8IXH7 590 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 C12orf56Q8IXR9 622 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 TMEM130Q8N3G9 435 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 TRIML1Q8N9V2 468 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 LPPQ93052 612 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 CCDC51Q96ER9 411 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 FBXL18Q96ME1 805 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 ACCSQ96QU6 501 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 DUSP9Q99956 384 aaKnown RBP10.18□□□□□ -0.78
VPS35-211ENST00000569950 FTHL17Q9BXU8 183 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 AGPAT3Q9NRZ7 376 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 DMAC2Q9NW81 257 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 KCNG1Q9UIX4 513 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 TRAF3IP3Q9Y228 551 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 IPPQ9Y573 584 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 PCDHB2Q9Y5E7 798 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 PCDHB13Q9Y5F0 798 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 TRIM49BA6NDI0 452 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 HNRNPDLO14979 420 aaKnown RBP10.17□□□□□ -0.78
VPS35-211ENST00000569950 N4BP3O15049 544 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 NPTXRO95502 500 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 MCF2P10911 925 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 TNFSF9P41273 254 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 HTRA4P83105 476 aaPredicted RBP10.17□□□□□ -0.78
VPS35-211ENST00000569950 IKBKEQ14164 716 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 NAB2Q15742 525 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 XKR4Q5GH76 650 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 TTI2Q6NXR4 508 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 ALKAL1Q6UXT8 129 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 LRRC55Q6ZSA7 311 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 FAM43BQ6ZT52 329 aaPredicted RBP10.17□□□□□ -0.78
VPS35-211ENST00000569950 C11orf57Q6ZUT1 292 aaPredicted RBP10.17□□□□□ -0.78
VPS35-211ENST00000569950 MYOCDQ8IZQ8 938 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 PLEKHO2Q8TD55 490 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 TOP1MTQ969P6 601 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 ZNF689Q96CS4 500 aaPredicted RBP10.17□□□□□ -0.78
VPS35-211ENST00000569950 LBHD1Q9BQE6 289 aaPredicted RBP10.17□□□□□ -0.78
VPS35-211ENST00000569950 RMND1Q9NWS8 449 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 PLAGL2Q9UPG8 496 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 SCN1AP35498 2009 aa10.17□□□□□ -0.78
VPS35-211ENST00000569950 GRXCR1A8MXD5 290 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 PDXKO00764 312 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 PTGESO14684 152 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 CLIC2O15247 247 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 ABCD1P33897 745 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 GRM5P41594 1212 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 CASP4P49662 377 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 LIG4P49917 911 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 NLRP12P59046 1061 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 STRN3Q13033 797 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 NOLC1Q14978 699 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS35-211ENST00000569950 ENOX2Q16206 610 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 NFIL3Q16649 462 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 SLC10A6Q3KNW5 377 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 ZNF568Q3ZCX4 644 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 SCARA3Q6AZY7 606 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 TWF2Q6IBS0 349 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 FOXR2Q6PJQ5 311 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 CHRDL2Q6WN34 429 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 SPRED2Q7Z698 418 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 ZBTB33Q86T24 672 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 BORCS6Q96GS4 357 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 FAM84AQ96KN4 292 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 UBE2OQ9C0C9 1292 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 GBP3Q9H0R5 595 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 HSD3B7Q9H2F3 369 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 ELAC1Q9H777 363 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 C1orf112Q9NSG2 853 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 TYW1Q9NV66 732 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 TMEM161AQ9NX61 479 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 MIOSQ9NXC5 875 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 ANKFY1Q9P2R3 1169 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 HCSTQ9UBK5 93 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 HOOK1Q9UJC3 728 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 CPSF3Q9UKF6 684 aaKnown RBP10.16□□□□□ -0.78
VPS35-211ENST00000569950 MYO9BQ13459 2157 aa10.16□□□□□ -0.78
VPS35-211ENST00000569950 MYO7AQ13402 2215 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 PLXNA4Q9HCM2 1894 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 PTPRJQ12913 1337 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 TTC26A0AVF1 554 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 LCHNA4D1U4 455 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 OGTO15294 1046 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 OFD1O75665 1012 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 DGKIO75912 1065 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 RECQL4O94761 1208 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 GJB5O95377 273 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 EOMESO95936 686 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 FGFR1P11362 822 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 ZSCAN20P17040 1043 aaPredicted RBP10.15□□□□□ -0.78
VPS35-211ENST00000569950 PTMSP20962 102 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 GARTP22102 1010 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms