RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CACNB1Q02641 598 aaPredicted RBP16.56■□□□□ 0.24
VPS39-210ENST00000568357 DLX2Q07687 328 aaPredicted RBP16.56■□□□□ 0.24
VPS39-210ENST00000568357 DMP1Q13316 513 aaPredicted RBP16.56■□□□□ 0.24
VPS39-210ENST00000568357 PKP1Q13835 747 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 MCM6Q14566 821 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 EP400NLQ6ZTU2 488 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 TAS1R3Q7RTX0 852 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 RBM23Q86U06 439 aaKnown RBP16.56■□□□□ 0.24
VPS39-210ENST00000568357 BCL7CQ8WUZ0 217 aaPredicted RBP16.56■□□□□ 0.24
VPS39-210ENST00000568357 RAD54LQ92698 747 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 TMEM134Q9H6X4 195 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 C17orf75Q9HAS0 396 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 KMT5AQ9NQR1 393 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 CLDND1Q9NY35 253 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 KCND2Q9NZV8 630 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 KLK14Q9P0G3 267 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 ARHGAP28Q9P2N2 729 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 GIT1Q9Y2X7 761 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 H3BQ06 376 aaPredicted RBP16.55■□□□□ 0.24
VPS39-210ENST00000568357 N4BP3O15049 544 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 PER2O15055 1255 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 SLC16A4O15374 487 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 NCK2O43639 380 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 ALDH2P05091 517 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 ZSCAN22P10073 491 aaPredicted RBP16.55■□□□□ 0.24
VPS39-210ENST00000568357 PLS3P13797 630 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 DDIT3P35638 169 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 NRIP1P48552 1158 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 NASPP49321 788 aaPredicted RBP16.55■□□□□ 0.24
VPS39-210ENST00000568357 SCNN1GP51170 649 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 ADAM15Q13444 863 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 TMEM132AQ24JP5 1023 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 LEXMQ3ZCV2 418 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 GPBP1Q86WP2 473 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 RASSF8Q8NHQ8 419 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 SPIRE2Q8WWL2 714 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 IGSF21Q96ID5 467 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 TCF25Q9BQ70 676 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 TLE6Q9H808 572 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 PARP2Q9UGN5 583 aa16.55■□□□□ 0.24
VPS39-210ENST00000568357 RBM19Q9Y4C8 960 aaKnown RBP16.55■□□□□ 0.24
VPS39-210ENST00000568357 MORC2Q9Y6X9 1032 aaPredicted RBP16.55■□□□□ 0.24
VPS39-210ENST00000568357 MYO7AQ13402 2215 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 HIDE1A8MVS5 230 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 ATF7IP2Q5U623 682 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 PLPP4Q5VZY2 271 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 PDE12Q6L8Q7 609 aaKnown RBP16.54■□□□□ 0.24
VPS39-210ENST00000568357 COLGALT2Q8IYK4 626 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 HACE1Q8IYU2 909 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 KRI1Q8N9T8 703 aaKnown RBP16.54■□□□□ 0.24
VPS39-210ENST00000568357 LINC00301Q8NCQ3 95 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 TMEM161BQ8NDZ6 487 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 TMEM169Q96HH4 297 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 FAM193BQ96PV7 902 aaPredicted RBP16.54■□□□□ 0.24
VPS39-210ENST00000568357 REEP2Q9BRK0 252 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 KCNH6Q9H252 994 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 CXCL16Q9H2A7 254 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 PTPRHQ9HD43 1115 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 SNTG2Q9NY99 539 aa16.54■□□□□ 0.24
VPS39-210ENST00000568357 NRP1O14786 923 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 DCXO43602 365 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 F13A1P00488 732 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 PDIA4P13667 645 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 RBM10P98175 930 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 DSC1Q08554 894 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 GIT2Q14161 759 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 STK38Q15208 465 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 FOXD4L6Q3SYB3 417 aaPredicted RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 PTCRAQ6ISU1 281 aaPredicted RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 FOXD4L3Q6VB84 417 aaPredicted RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 TMC7Q7Z402 723 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 DDX53Q86TM3 631 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 EFHBQ8N7U6 833 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 MRPL43Q8N983 215 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 PPP2R3CQ969Q6 453 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 ZNF396Q96N95 335 aaPredicted RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 ACO2Q99798 780 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 ADPGKQ9BRR6 497 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 TMEM175Q9BSA9 504 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 TARS2Q9BW92 718 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 VN1R3Q9BXE9 311 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 PANK2Q9BZ23 570 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 NGRNQ9NPE2 291 aaKnown RBP16.53■□□□□ 0.24
VPS39-210ENST00000568357 ENTPD7Q9NQZ7 604 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 TNFSF13BQ9Y275 285 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 FAN1Q9Y2M0 1017 aa16.53■□□□□ 0.24
VPS39-210ENST00000568357 PHLPP2Q6ZVD8 1323 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 SPTLC2O15270 562 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 TBX10O75333 385 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 MAPTP10636 758 aaKnown RBP16.52■□□□□ 0.24
VPS39-210ENST00000568357 SMTNP53814 917 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 DUSP6Q16828 381 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 VPS52Q8N1B4 723 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 VN1R2Q8NFZ6 395 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 LARP4BQ92615 738 aaKnown RBP16.52■□□□□ 0.24
VPS39-210ENST00000568357 MRPL4Q9BYD3 311 aaKnown RBP16.52■□□□□ 0.24
VPS39-210ENST00000568357 CLEC1BQ9P126 229 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 CCDC39Q9UFE4 941 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 KCNG1Q9UIX4 513 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 ODF2LQ9ULJ1 636 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms