RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 EPC1Q9H2F5 836 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 WDR6Q9NNW5 1121 aaKnown RBP12.59□□□□□ -0.39
CLN3-226ENST00000567160 SLC2A4RGQ9NR83 387 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 DACT1Q9NYF0 836 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 PATJQ8NI35 1801 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 CLUHO75153 1309 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 A0A0U1RQF3 1178 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 VWA3AA6NCI4 1184 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 POTEMA6NI47 508 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 BACH1O14867 736 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 CHMP2AO43633 222 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 TBC1D4O60343 1298 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 N4BP1O75113 896 aaKnown RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 GPR32O75388 356 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 MAGEA9P43362 315 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 ME1P48163 572 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 CSTF1Q05048 431 aaKnown RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 IL17AQ16552 155 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 ARL6IP4Q66PJ3 421 aaKnown RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 POTEGQ6S5H5 508 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 DTHD1Q6ZMT9 781 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 MAML2Q8IZL2 1156 aaPredicted RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 METTL13Q8N6R0 699 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 SCAND2PQ9GZW5 306 aaPredicted RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 UNC45AQ9H3U1 944 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 TTC12Q9H892 705 aaPredicted RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 TBC1D22BQ9NU19 505 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 ZSCAN32Q9NX65 697 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLN3-226ENST00000567160 FBXO2Q9UK22 296 aaPredicted RBP12.58□□□□□ -0.4
CLN3-226ENST00000567160 RCOR1Q9UKL0 485 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 PCDHA12Q9UN75 941 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 ARID2Q68CP9 1835 aa12.58□□□□□ -0.4
CLN3-226ENST00000567160 CCDC195A0A1B0GUA6 201 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 DHX15O43143 795 aaKnown RBP12.57□□□□□ -0.4
CLN3-226ENST00000567160 PSMD10O75832 226 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 VTNP04004 478 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 PRPHP41219 470 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 STARD6P59095 220 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 GRIN1Q05586 938 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 ACAP1Q15027 740 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 NCAPH2Q6IBW4 605 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 ZNF598Q86UK7 904 aaKnown RBP12.57□□□□□ -0.4
CLN3-226ENST00000567160 KRI1Q8N9T8 703 aaKnown RBP12.57□□□□□ -0.4
CLN3-226ENST00000567160 FEZF2Q8TBJ5 459 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 NETO1Q8TDF5 533 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 CLIC6Q96NY7 704 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 GBP4Q96PP9 640 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 KLHL5Q96PQ7 755 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 MAP7D2Q96T17 732 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 RIT2Q99578 217 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 FOXQ1Q9C009 403 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 MRPL17Q9NRX2 175 aaKnown RBP12.57□□□□□ -0.4
CLN3-226ENST00000567160 TCEAL9Q9UHQ7 104 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 VAV3Q9UKW4 847 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 RAB23Q9ULC3 237 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 PKD1L2Q7Z442 2459 aa12.57□□□□□ -0.4
CLN3-226ENST00000567160 IGKV6D-21A0A0A0MT36 114 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 KANSL1LA0AUZ9 987 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 SLC30A4O14863 429 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 PPP6R2O75170 966 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 ATG7O95352 703 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 C22orf31O95567 290 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 CNPP09543 421 aaKnown RBP12.56□□□□□ -0.4
CLN3-226ENST00000567160 GLULP15104 373 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 EIF4BP23588 611 aaKnown RBP12.56□□□□□ -0.4
CLN3-226ENST00000567160 TMOD1P28289 359 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 RNASELQ05823 741 aaKnown RBP12.56□□□□□ -0.4
CLN3-226ENST00000567160 PDXDC2PQ6P474 469 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 TMEM173Q86WV6 379 aaPredicted RBP12.56□□□□□ -0.4
CLN3-226ENST00000567160 CKAP2LQ8IYA6 745 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 ZBTB44Q8NCP5 570 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 DDX1Q92499 740 aaKnown RBP12.56□□□□□ -0.4
CLN3-226ENST00000567160 MYADMQ96S97 322 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 OSBPL6Q9BZF3 934 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 CSRNP2Q9H175 543 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 ZNF302Q9NR11 478 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 MAN1C1Q9NR34 630 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 ANGPTL2Q9UKU9 493 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 PCDHA7Q9UN72 937 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 AKT3Q9Y243 479 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 SSX2IPQ9Y2D8 614 aa12.56□□□□□ -0.4
CLN3-226ENST00000567160 SRPRBQ9Y5M8 271 aaKnown RBP12.56□□□□□ -0.4
CLN3-226ENST00000567160 PP2D1A8MPX8 630 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 EML1O00423 815 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 INPPL1O15357 1258 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 MAGEB2O15479 319 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 CUTAO60888 179 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 CCNE2O96020 404 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 ADH1AP07327 375 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 GALTP07902 379 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 SKIP12755 728 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 LAMP2P13473 410 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 FXR2P51116 673 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLN3-226ENST00000567160 NLRP11P59045 1033 aaKnown RBP12.55□□□□□ -0.4
CLN3-226ENST00000567160 SPIRE1Q08AE8 756 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 PPP2R5CQ13362 524 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 MIS18BP1Q6P0N0 1132 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 GLB1LQ6UWU2 654 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 CLEC17AQ6ZS10 378 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms