RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 DUSP12Q9UNI6 340 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 LIMCH1Q9UPQ0 1083 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 FAN1Q9Y2M0 1017 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 PRG3Q9Y2Y8 225 aaPredicted RBP21.09■□□□□ 0.97
VPS35-202ENST00000561713 DMXL1Q9Y485 3027 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 F8W810 466 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 NRP1O14786 923 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 NARSO43776 548 aaKnown RBP21.08■□□□□ 0.97
VPS35-202ENST00000561713 DGAT1O75907 488 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 SPATA31C1P0DKV0 1188 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 SAFBQ15424 915 aaKnown RBP eCLIP21.08■□□□□ 0.97
VPS35-202ENST00000561713 ZNF174Q15697 407 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 AMHR2Q16671 573 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 C15orf39Q6ZRI6 1047 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 TAS1R1Q7RTX1 841 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 CCDC105Q8IYK2 499 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 ADSSL1Q8N142 457 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 ZFP42Q96MM3 310 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 FAM193BQ96PV7 902 aaPredicted RBP21.08■□□□□ 0.97
VPS35-202ENST00000561713 GAD1Q99259 594 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 STK39Q9UEW8 545 aa21.08■□□□□ 0.97
VPS35-202ENST00000561713 ZNF292O60281 2723 aa21.08■□□□□ 0.96
VPS35-202ENST00000561713 CNTNAP2Q9UHC6 1331 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 ASAP2O43150 1006 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 MYBP10242 640 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 ITGA4P13612 1032 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 ARF4P18085 180 aaPredicted RBP21.07■□□□□ 0.96
VPS35-202ENST00000561713 NCLP19338 710 aaKnown RBP21.07■□□□□ 0.96
VPS35-202ENST00000561713 ARL2P36404 184 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 TFDP1Q14186 410 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 MXD4Q14582 209 aaPredicted RBP21.07■□□□□ 0.96
VPS35-202ENST00000561713 ANGPT1Q15389 498 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 NOTUMQ6P988 496 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 RSAD2Q8WXG1 361 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 TMEM175Q9BSA9 504 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 MAN1C1Q9NR34 630 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 MARCH5Q9NX47 278 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 KANSL3Q9P2N6 904 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 DNAH14Q0VDD8 3507 aa21.07■□□□□ 0.96
VPS35-202ENST00000561713 GVINP1Q7Z2Y8 2422 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 LRRIQ4A6NIV6 560 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 SOD2P04179 222 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 OR52Z1P0C646 297 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 SCNN1GP51170 649 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 C8orf34Q49A92 452 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 DTWD2Q8NBA8 298 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 KIF2CQ99661 725 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 RTP3Q9BQQ7 232 aa21.06■□□□□ 0.96
VPS35-202ENST00000561713 CCDC195A0A1B0GUA6 201 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 NPTXRO95502 500 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 CATSPER3Q86XQ3 398 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 IFNLR1Q8IU57 520 aaPredicted RBP21.05■□□□□ 0.96
VPS35-202ENST00000561713 CMASQ8NFW8 434 aaPredicted RBP21.05■□□□□ 0.96
VPS35-202ENST00000561713 BSNDQ8WZ55 320 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 RPS6KC1Q96S38 1066 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 CSRNP2Q9H175 543 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 IGSF9Q9P2J2 1179 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 CACNG4Q9UBN1 327 aa21.05■□□□□ 0.96
VPS35-202ENST00000561713 ARL5CA6NH57 179 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 TEX28O15482 410 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 URODP06132 367 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 CFHP08603 1231 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 AKAP5P24588 427 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 GBP2P32456 591 aaPredicted RBP21.04■□□□□ 0.96
VPS35-202ENST00000561713 OR1G1P47890 313 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 TTC38Q5R3I4 469 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 CCDC51Q96ER9 411 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 TRIM6Q9C030 488 aaPredicted RBP21.04■□□□□ 0.96
VPS35-202ENST00000561713 WDR6Q9NNW5 1121 aaKnown RBP21.04■□□□□ 0.96
VPS35-202ENST00000561713 MIOSQ9NXC5 875 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 USP20Q9Y2K6 914 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 MYH11P35749 1972 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 VWA8A3KMH1 1905 aa21.04■□□□□ 0.96
VPS35-202ENST00000561713 MTCL1Q9Y4B5 1905 aaKnown RBP21.04■□□□□ 0.96
VPS35-202ENST00000561713 KRBA1A5PL33 1030 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 TTLL13PA6NNM8 815 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 STK25O00506 426 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 RFPL2O75678 378 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 ADH1AP07327 375 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 SPATA31D3P0C874 917 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 GNL2Q13823 731 aaKnown RBP21.03■□□□□ 0.96
VPS35-202ENST00000561713 KIAA0319Q5VV43 1072 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 SPATA31D4Q6ZUB0 917 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 COLGALT2Q8IYK4 626 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 LLPHQ9BRT6 129 aaKnown RBP21.03■□□□□ 0.96
VPS35-202ENST00000561713 HERC2P3Q9BVR0 1158 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 TUFT1Q9NNX1 390 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 KLK14Q9P0G3 267 aa21.03■□□□□ 0.96
VPS35-202ENST00000561713 INPPL1O15357 1258 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 EIF5BO60841 1220 aaKnown RBP21.02■□□□□ 0.96
VPS35-202ENST00000561713 EFEMP2O95967 443 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 EDN1P05305 212 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 LIG1P18858 919 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 AXLP30530 894 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 ID4P47928 161 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 FAM184AQ8NB25 1140 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 FBXO18Q8NFZ0 1043 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 RABGGTAQ92696 567 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 B3GALT6Q96L58 329 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 MYADMQ96S97 322 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms