RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 COLGALT2Q8IYK4 626 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 FBXL6Q8N531 539 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 KREMEN2Q8NCW0 462 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 STAMQ92783 540 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 KIFAP3Q92845 792 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 HERC2P3Q9BVR0 1158 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 TMEM60Q9H2L4 133 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 MFSD1Q9H3U5 465 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 POMKQ9H5K3 350 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 SORCS3Q9UPU3 1222 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 DNM3Q9UQ16 869 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 USTQ9Y2C2 406 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 HES2Q9Y543 173 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 LAD1O00515 517 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 MED24O75448 989 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 SEC24BO95487 1268 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 GLUD1P00367 558 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 CNPP09543 421 aaKnown RBP13.89□□□□□ -0.19
SNX1-209ENST00000559961 SPATA31C1P0DKV0 1188 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 CYP11B2P19099 503 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 PTPN5P54829 565 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 PDIA5Q14554 519 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 MCTP1Q6DN14 999 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 CYP26C1Q6V0L0 522 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 PPP4R3CPQ6ZMV5 832 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 SLC22A17Q8WUG5 538 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 RNF39Q9H2S5 420 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 NXF3Q9H4D5 531 aaKnown RBP13.89□□□□□ -0.19
SNX1-209ENST00000559961 PIDD1Q9HB75 910 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 LIMD1Q9UGP4 676 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 KCNG1Q9UIX4 513 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 PHLPP2Q6ZVD8 1323 aa13.89□□□□□ -0.19
SNX1-209ENST00000559961 ZMYM2Q9UBW7 1377 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 C2CD4DB7Z1M9 353 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 H3BQV1 296 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 INPPL1O15357 1258 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 PRKCBP05771 671 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 THP07101 528 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 WEE2P0C1S8 567 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 NAMPTP43490 491 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 CLCN4P51793 760 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 ELAVL2Q12926 359 aaKnown RBP13.88□□□□□ -0.19
SNX1-209ENST00000559961 FAM187BQ17R55 369 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 DCAF4L1Q3SXM0 396 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 POTEGQ6S5H5 508 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 DTHD1Q6ZMT9 781 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 C15orf39Q6ZRI6 1047 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 GPR149Q86SP6 731 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 ZDHHC14Q8IZN3 488 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 BCL7CQ8WUZ0 217 aaPredicted RBP13.88□□□□□ -0.19
SNX1-209ENST00000559961 ZFP42Q96MM3 310 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 GPRC5CQ9NQ84 441 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 KLK14Q9P0G3 267 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 ADAM28Q9UKQ2 775 aa13.88□□□□□ -0.19
SNX1-209ENST00000559961 KIAA1671Q9BY89 1806 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 PLXNA4Q9HCM2 1894 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 CCDC169A6NNP5 214 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 K7ERI5 159 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 ACKR2O00590 384 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 B4GALT5O43286 388 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 HOXD11P31277 338 aaPredicted RBP13.87□□□□□ -0.19
SNX1-209ENST00000559961 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.19
SNX1-209ENST00000559961 AFF1P51825 1210 aaKnown RBP13.87□□□□□ -0.19
SNX1-209ENST00000559961 YARSP54577 528 aaKnown RBP13.87□□□□□ -0.19
SNX1-209ENST00000559961 DSC1Q08554 894 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 RABEP1Q15276 862 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 AMHR2Q16671 573 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 PDXDC1Q6P996 788 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 CDR2LQ86X02 465 aaPredicted RBP13.87□□□□□ -0.19
SNX1-209ENST00000559961 GPR65Q8IYL9 337 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 SNX29Q8TEQ0 813 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 HDAC7Q8WUI4 952 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 CDK5RAP3Q96JB5 506 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 BHMT2Q9H2M3 363 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 FZD8Q9H461 694 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 PLEKHA4Q9H4M7 779 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 MAN1C1Q9NR34 630 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 KIAA1024Q9UPX6 916 aa13.87□□□□□ -0.19
SNX1-209ENST00000559961 SF3B1O75533 1304 aaKnown RBP eCLIP13.87□□□□□ -0.19
SNX1-209ENST00000559961 CCDC195A0A1B0GUA6 201 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 WNT7AO00755 349 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 C1RP00736 705 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 RFX1P22670 979 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 GBP2P32456 591 aaPredicted RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 NUBP1P53384 320 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 DSG1Q02413 1049 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 PTGDRQ13258 359 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 TUSC3Q13454 348 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 HSP90AA2PQ14568 343 aaPredicted RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 CDCA2Q69YH5 1023 aaPredicted RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 FUT10Q6P4F1 479 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 ALYREFQ86V81 257 aaKnown RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 PALB2Q86YC2 1186 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 CMASQ8NFW8 434 aaPredicted RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 RIN2Q8WYP3 895 aaPredicted RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 DRC1Q96MC2 740 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 DDX19AQ9NUU7 478 aaKnown RBP13.86□□□□□ -0.19
SNX1-209ENST00000559961 MIOSQ9NXC5 875 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 SNTG2Q9NY99 539 aa13.86□□□□□ -0.19
SNX1-209ENST00000559961 TEX28O15482 410 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms