RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TATDN1Q6P1N9 297 aa17.49■□□□□ 0.39
SHMT2-232ENST00000557487 TTC27Q6P3X3 843 aa17.49■□□□□ 0.39
SHMT2-232ENST00000557487 CERS5Q8N5B7 392 aa17.49■□□□□ 0.39
SHMT2-232ENST00000557487 DYDC2Q96IM9 177 aa17.49■□□□□ 0.39
SHMT2-232ENST00000557487 RSRC1Q96IZ7 334 aaKnown RBP17.49■□□□□ 0.39
SHMT2-232ENST00000557487 CEP83Q9Y592 693 aa17.49■□□□□ 0.39
SHMT2-232ENST00000557487 CYP1A2P05177 515 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 POTEJP0CG39 1038 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 ITIH2P19823 946 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 RWDD2BP57060 319 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 MCCD1P59942 119 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-232ENST00000557487 GALNTL6Q49A17 601 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 EPC2Q52LR7 807 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 SYCP3Q8IZU3 236 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 EPS8L3Q8TE67 593 aaKnown RBP17.48■□□□□ 0.39
SHMT2-232ENST00000557487 PIGOQ8TEQ8 1089 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 DYDC1Q8WWB3 177 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 KRT35Q92764 455 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 DNAJC18Q9H819 358 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 UBE2TQ9NPD8 197 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-232ENST00000557487 BATF3Q9NR55 127 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 KCNQ5Q9NR82 932 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 LOXHD1Q8IVV2 1947 aa17.48■□□□□ 0.39
SHMT2-232ENST00000557487 RAD21O60216 631 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 COG2Q14746 738 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 MIGA2Q7L4E1 593 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 PALB2Q86YC2 1186 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 RPUSD2Q8IZ73 545 aaKnown RBP17.47■□□□□ 0.39
SHMT2-232ENST00000557487 MASTLQ96GX5 879 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 ZDHHC15Q96MV8 337 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 ZC3H12CQ9C0D7 883 aaKnown RBP17.47■□□□□ 0.39
SHMT2-232ENST00000557487 BAIAP2L1Q9UHR4 511 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 GTF3C4Q9UKN8 822 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-232ENST00000557487 LRRN2O75325 713 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 BMP3P12645 472 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 NQO1P15559 274 aaKnown RBP17.47■□□□□ 0.39
SHMT2-232ENST00000557487 FGFR4P22455 802 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 VAMP7P51809 220 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 USH1GQ495M9 461 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 EXOC3L1Q86VI1 746 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 TTLL6Q8N841 843 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 GRK7Q8WTQ7 553 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 SLC20A1Q8WUM9 679 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 MIEF2Q96C03 454 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 GRAMD1AQ96CP6 724 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 IDI2Q9BXS1 227 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 BCS1LQ9Y276 419 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 ARL2BPQ9Y2Y0 163 aa17.47■□□□□ 0.39
SHMT2-232ENST00000557487 SMIM23A6NLE4 172 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 PPEF1O14829 653 aaPredicted RBP17.46■□□□□ 0.39
SHMT2-232ENST00000557487 OPLAHO14841 1288 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 SPOPO43791 374 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 NDUFB10O96000 172 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 PYGMP11217 842 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 NPR1P16066 1061 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 SKIV2L2P42285 1042 aaKnown RBP17.46■□□□□ 0.39
SHMT2-232ENST00000557487 MESDQ14696 234 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 SIX1Q15475 284 aaPredicted RBP17.46■□□□□ 0.39
SHMT2-232ENST00000557487 CEP128Q6ZU80 1094 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 SIAH1Q8IUQ4 282 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 FAM71AQ8IYT1 594 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 MAB21L3Q8N8X9 362 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 SUFUQ9UMX1 484 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 EMSYQ7Z589 1322 aa17.46■□□□□ 0.39
SHMT2-232ENST00000557487 FSCN2O14926 492 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 GAS7O60861 476 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 GJB6O95452 261 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 PPARDQ03181 441 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 BNIP1Q12981 228 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 IKQ13123 557 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ZNF564Q8TBZ8 553 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 CKAP2Q8WWK9 683 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ARHGEF2Q92974 986 aaKnown RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 CNKSR1Q969H4 720 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 BCAS3Q9H6U6 928 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 LARSQ9P2J5 1176 aaKnown RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ACTL7BQ9Y614 415 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ARHGEF35A5YM69 484 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 RARAP10276 462 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 CCND1P24385 295 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 GBP2P32456 591 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 MARCKSL1P49006 195 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 COPS2P61201 443 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 NCALDP61601 193 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 RHBDF2Q6PJF5 856 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 RNF207Q6ZRF8 634 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ZDHHC14Q8IZN3 488 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 BBOF1Q8ND07 529 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 CYP2W1Q8TAV3 490 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 EPS8L1Q8TE68 723 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 TCP11Q8WWU5 503 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ANKRD27Q96NW4 1050 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 ACCSQ96QU6 501 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 IWS1Q96ST2 819 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 WDR18Q9BV38 432 aa17.45■□□□□ 0.38
SHMT2-232ENST00000557487 CDC42EP4Q9H3Q1 356 aaKnown RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 NOCTQ9UK39 431 aaKnown RBP17.45■□□□□ 0.38
SHMT2-232ENST00000557487 COL11A2P13942 1736 aaPredicted RBP17.44■□□□□ 0.38
SHMT2-232ENST00000557487 TMEM110-MUSTN1A8MSY1 372 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms