RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FOXN3O00409 490 aaPredicted RBP28.5■■■□□ 2.15
CCDC88C-205ENST00000553403 GH1P01241 217 aa28.5■■■□□ 2.15
CCDC88C-205ENST00000553403 CLDN10P78369 228 aa28.5■■■□□ 2.15
CCDC88C-205ENST00000553403 MAMDC4Q6UXC1 1216 aa28.5■■■□□ 2.15
CCDC88C-205ENST00000553403 PAXIP1Q6ZW49 1069 aaPredicted RBP28.5■■■□□ 2.15
CCDC88C-205ENST00000553403 FBXL13Q8NEE6 735 aa28.5■■■□□ 2.15
CCDC88C-205ENST00000553403 BUB1O43683 1085 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 H2AFZP0C0S5 128 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 NAP1L1P55209 391 aaKnown RBP28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 IFI16Q16666 785 aaKnown RBP28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 FAM110CQ1W6H9 321 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 CDCA2Q69YH5 1023 aaPredicted RBP28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 ZPBP2Q6X784 338 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 H2AFVQ71UI9 128 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 LNX1Q8TBB1 728 aaPredicted RBP28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 SEMA4DQ92854 862 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 RPGRIP1Q96KN7 1286 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 PCDHGC5Q9Y5F6 944 aa28.49■■■□□ 2.15
CCDC88C-205ENST00000553403 MKRN4PQ13434 485 aaPredicted RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 DRP2Q13474 957 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 GRB14Q14449 540 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 TMEM63BQ5T3F8 832 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 GPR142Q7Z601 462 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 U2AF1L4Q8WU68 220 aaKnown RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 EMID1Q96A84 441 aaPredicted RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 POP1Q99575 1024 aaKnown RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 PTPN18Q99952 460 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 TARS2Q9BW92 718 aaKnown RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 ARGLU1Q9NWB6 273 aaPredicted RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 RAB20Q9NX57 234 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 HYOU1Q9Y4L1 999 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 A0A0A6YYK5 440 aaPredicted RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 A0A0B4J269 797 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 TCP1P17987 556 aaKnown RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 MAPK4P31152 587 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 VEGFBP49765 207 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 MFAP3P55082 362 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 SV2AQ7L0J3 742 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 NT5C1BQ96P26 610 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 KATNBL1Q9H079 304 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 CCDC113Q9H0I3 377 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 C2orf40Q9H1Z8 148 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 TOPORSQ9NS56 1045 aaPredicted RBP28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 ERAP1Q9NZ08 941 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 TRPC6Q9Y210 931 aa28.48■■■□□ 2.15
CCDC88C-205ENST00000553403 ZC3H11AO75152 810 aaKnown RBP eCLIP28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 LRRN2O75325 713 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 TFRCP02786 760 aaKnown RBP28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 HSPA1AP0DMV8 641 aaKnown RBP28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 HSPA1BP0DMV9 641 aaKnown RBP28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 LAMTOR4Q0VGL1 99 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 C15orf39Q6ZRI6 1047 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 PLEKHH3Q7Z736 793 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 ZBTB8OSQ8IWT0 167 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 FAM81BQ96LP2 452 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 TRPM7Q96QT4 1865 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 HAPLN2Q9GZV7 340 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 SUGCTQ9HAC7 445 aa28.47■■■□□ 2.15
CCDC88C-205ENST00000553403 ADGRA2Q96PE1 1338 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 SRGAP2O75044 1071 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 DLATP10515 647 aaKnown RBP28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 TNFAIP3P21580 790 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 PPTC7Q8NI37 304 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 TAS1R2Q8TE23 839 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 FNBP1Q96RU3 617 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 MSTO1Q9BUK6 570 aa28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 MRPL4Q9BYD3 311 aaKnown RBP28.46■■■□□ 2.15
CCDC88C-205ENST00000553403 PALMO75781 387 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 NLRP11P59045 1033 aaKnown RBP28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 ZNF484Q5JVG2 852 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 CRELD2Q6UXH1 353 aaPredicted RBP28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 DPP9Q86TI2 863 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 GLYCTKQ8IVS8 523 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 FAM71AQ8IYT1 594 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 HELQQ8TDG4 1101 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 ZBTB45Q96K62 511 aaPredicted RBP28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 KREMEN1Q96MU8 473 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 AGPAT1Q99943 283 aa28.45■■■□□ 2.15
CCDC88C-205ENST00000553403 SNAI1O95863 264 aaPredicted RBP28.45■■■□□ 2.14
CCDC88C-205ENST00000553403 TFDP1Q14186 410 aa28.45■■■□□ 2.14
CCDC88C-205ENST00000553403 CST9Q5W186 159 aa28.45■■■□□ 2.14
CCDC88C-205ENST00000553403 ENOSF1Q7L5Y1 443 aa28.45■■■□□ 2.14
CCDC88C-205ENST00000553403 SHC3Q92529 594 aa28.45■■■□□ 2.14
CCDC88C-205ENST00000553403 SUCLA2Q9P2R7 463 aaPredicted RBP28.45■■■□□ 2.14
CCDC88C-205ENST00000553403 SLC15A5A6NIM6 579 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 ASAP2O43150 1006 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 MSCO60682 206 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 EDN1P05305 212 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 ZSCAN20P17040 1043 aaPredicted RBP28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 PPM1KQ8N3J5 372 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 LRRC71Q8N4P6 559 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 MSANTD4Q8NCY6 345 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 OSBPL9Q96SU4 736 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 TLR10Q9BXR5 811 aa28.44■■■□□ 2.14
CCDC88C-205ENST00000553403 LGALS2P05162 132 aa28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 MATR3P43243 847 aaKnown RBP eCLIP28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 ZNF572Q7Z3I7 529 aaPredicted RBP28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 RNF149Q8NC42 400 aa28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 ZNF516Q92618 1163 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms