RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 KMT5AQ9NQR1 393 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 ODF2LQ9ULJ1 636 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 TNFSF13BQ9Y275 285 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 IRAK3Q9Y616 596 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 PHLPP2Q6ZVD8 1323 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 HIDE1A8MVS5 230 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 NRP1O14786 923 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 SLC16A4O15374 487 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 YEATS4O95619 227 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 BRD1O95696 1058 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 ALDH2P05091 517 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 SSBP05455 408 aaKnown RBP eCLIP12.57□□□□□ -0.4
YBX3-216ENST00000544622 MAPTP10636 758 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 SCNN1GP51170 649 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 NCKAP1LP55160 1127 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 CACNB1Q02641 598 aaPredicted RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 RNASELQ05823 741 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 NAB2Q15742 525 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 DDX53Q86TM3 631 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 RNF168Q8IYW5 571 aaPredicted RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 EFHBQ8N7U6 833 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 MRPL43Q8N983 215 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 URGCPQ8TCY9 931 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 LARP4BQ92615 738 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 TCF25Q9BQ70 676 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 REEP2Q9BRK0 252 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 CXCL16Q9H2A7 254 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 MARCH5Q9NX47 278 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 SNTG2Q9NY99 539 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 CLEC1BQ9P126 229 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 LARSQ9P2J5 1176 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 TFIP11Q9UBB9 837 aaKnown RBP12.57□□□□□ -0.4
YBX3-216ENST00000544622 ZDHHC9Q9Y397 364 aa12.57□□□□□ -0.4
YBX3-216ENST00000544622 A0A087X0B3 334 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 PTGESO14684 152 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 SPTLC2O15270 562 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 LINC01565O15544 149 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 LILRB3O75022 631 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 GLP2RO95838 553 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 KCNA5P22460 613 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 DUSP6Q16828 381 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 AXDND1Q5T1B0 1012 aaPredicted RBP12.56□□□□□ -0.4
YBX3-216ENST00000544622 ATL3Q6DD88 541 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 ALKAL1Q6UXT8 129 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 TMEM184AQ6ZMB5 413 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 GPBP1Q86WP2 473 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 HACE1Q8IYU2 909 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 MICAL1Q8TDZ2 1067 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 TMEM169Q96HH4 297 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 MSLNLQ96KJ4 702 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 ZNF396Q96N95 335 aaPredicted RBP12.56□□□□□ -0.4
YBX3-216ENST00000544622 CDCA3Q99618 268 aaPredicted RBP12.56□□□□□ -0.4
YBX3-216ENST00000544622 ADPGKQ9BRR6 497 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 MRPL4Q9BYD3 311 aaKnown RBP12.56□□□□□ -0.4
YBX3-216ENST00000544622 ZBP1Q9H171 429 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 CLDND1Q9NY35 253 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 STK17AQ9UEE5 414 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 CCDC39Q9UFE4 941 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 FAN1Q9Y2M0 1017 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 NCOR1O75376 2440 aa12.56□□□□□ -0.4
YBX3-216ENST00000544622 GRXCR2A6NFK2 248 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 C2orf71A6NGG8 1288 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 H3BQ06 376 aaPredicted RBP12.55□□□□□ -0.4
YBX3-216ENST00000544622 PER2O15055 1255 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 TBX10O75333 385 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 HSP90AA1P07900 732 aaKnown RBP12.55□□□□□ -0.4
YBX3-216ENST00000544622 CTSAP10619 480 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 LIG1P18858 919 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 SCP2P22307 547 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 NRIP1P48552 1158 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 SMTNP53814 917 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 GRIK3Q13003 919 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 DHX8Q14562 1220 aaKnown RBP12.55□□□□□ -0.4
YBX3-216ENST00000544622 DCAF4L1Q3SXM0 396 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 XKR4Q5GH76 650 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 ZPBP2Q6X784 338 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 TMC7Q7Z402 723 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 RBM23Q86U06 439 aaKnown RBP12.55□□□□□ -0.4
YBX3-216ENST00000544622 VPS52Q8N1B4 723 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 SPRYD3Q8NCJ5 442 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 VN1R2Q8NFZ6 395 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 PPP2R3CQ969Q6 453 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 DNAJC19Q96DA6 116 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 FAM193BQ96PV7 902 aaPredicted RBP12.55□□□□□ -0.4
YBX3-216ENST00000544622 TARS2Q9BW92 718 aaKnown RBP12.55□□□□□ -0.4
YBX3-216ENST00000544622 APOL6Q9BWW8 343 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 GBP3Q9H0R5 595 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 CDT1Q9H211 546 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 ST6GALNAC4Q9H4F1 302 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 IGFLR1Q9H665 355 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 TLE6Q9H808 572 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 PARVGQ9HBI0 331 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 KLK14Q9P0G3 267 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 STK39Q9UEW8 545 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 PARP2Q9UGN5 583 aa12.55□□□□□ -0.4
YBX3-216ENST00000544622 MYMKA6NI61 221 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 F8W810 466 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 MEFVO15553 781 aaPredicted RBP12.54□□□□□ -0.4
YBX3-216ENST00000544622 TRAK2O60296 914 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 TOM1L1O75674 476 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms