RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MAGEA13PA6NCF6 341 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 GAS7O60861 476 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 COMTP21964 271 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 ZNF483Q8TF39 744 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-215ENST00000544547 RBM15Q96T37 977 aaKnown RBP eCLIP15.14■□□□□ 0.01
LIMS1-215ENST00000544547 THAP2Q9H0W7 228 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 ZNF335Q9H4Z2 1342 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-215ENST00000544547 MGRN1O60291 552 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 ALDH1B1P30837 517 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 PIK3CAP42336 1068 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 GRM4Q14833 912 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 WLSQ5T9L3 541 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 STK32AQ8WU08 396 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 DTNBP1Q96EV8 351 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 NEUROG2Q9H2A3 272 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 CTNNAL1Q9UBT7 734 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 KCNG1Q9UIX4 513 aa15.14■□□□□ 0.01
LIMS1-215ENST00000544547 TAF1BQ53T94 588 aaPredicted RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 MIIPQ5JXC2 388 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 NXNQ6DKJ4 435 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 MIER3Q7Z3K6 550 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 CCDC125Q86Z20 511 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 SLFN12Q8IYM2 578 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 CHURC1Q8WUH1 139 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ATXN2Q99700 1313 aaKnown RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 AHCYL1O43865 530 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 TTLL1O95922 423 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ATP6V1B1P15313 513 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 TNFRSF8P28908 595 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ITGA8P53708 1063 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ROR2Q01974 943 aaKnown RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 MAP3K21Q5TCX8 1036 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 RNF220Q5VTB9 566 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 MTDHQ86UE4 582 aaKnown RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 GLIS3Q8NEA6 775 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 PPP4R1Q8TF05 950 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ATG4AQ8WYN0 398 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 RIOK1Q9BRS2 568 aaKnown RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 RNPEPL1Q9HAU8 725 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 NOD1Q9Y239 953 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 H3BRJ5 948 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 PJA2O43164 708 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 MMEL1Q495T6 779 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 CENPUQ71F23 418 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 NLRP9Q7RTR0 991 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 INPP4AQ96PE3 977 aaPredicted RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ROPN1BQ9BZX4 212 aaPredicted RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ROPN1Q9HAT0 212 aaPredicted RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 SIK3Q9Y2K2 1263 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 APBA3O96018 575 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 PDIA2Q13087 525 aaKnown RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 RASA3Q14644 834 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ZCWPW2Q504Y3 356 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 NAALADL2Q58DX5 795 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 C12orf60Q5U649 245 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 ZNF513Q8N8E2 541 aaPredicted RBP15.13■□□□□ 0.01
LIMS1-215ENST00000544547 VGLL2Q8N8G2 317 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 CARD9Q9H257 536 aa15.13■□□□□ 0.01
LIMS1-215ENST00000544547 MXI1P50539 228 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 CCDC14Q49A88 953 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 ACBD5Q5T8D3 534 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 AADACL2Q6P093 401 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 LVRNQ6Q4G3 990 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 SLC30A5Q8TAD4 765 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 BTBD6Q96KE9 485 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 RARGP13631 454 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 GPS1Q13098 491 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 BRDTQ58F21 947 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 MIS18BP1Q6P0N0 1132 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 NLRX1Q86UT6 975 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 MYLK2Q9H1R3 596 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 TSPYL2Q9H2G4 693 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 STK24Q9Y6E0 443 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 RNF8O76064 485 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 CHRM1P11229 460 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 ACADSP16219 412 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 PTDSS1P48651 473 aaKnown RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 MFAP3P55082 362 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 TPD52P55327 224 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 NKX1-1Q15270 411 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 SCG3Q8WXD2 468 aaKnown RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 SYN2Q92777 582 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 TRAIPQ9BWF2 469 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 MOV10L1Q9BXT6 1211 aaKnown RBP15.12■□□□□ 0.01
LIMS1-215ENST00000544547 HEY2Q9UBP5 337 aa15.12■□□□□ 0.01
LIMS1-215ENST00000544547 MRPS9P82933 396 aaKnown RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 SEMA3FQ13275 785 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 IL17AQ16552 155 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 NIM1KQ8IY84 436 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 MIS12Q9H081 205 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.11■□□□□ 0.014e-7■■□□□ 13.5
LIMS1-215ENST00000544547 FAM196BA6NMK8 535 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 CAMTA2O94983 1202 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 RPL21P46778 160 aaKnown RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 STAT4Q14765 748 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 SYCP2LQ5T4T6 812 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 RBBP8NLQ8NC74 664 aaPredicted RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 MTBPQ96DY7 904 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 NT5C1BQ96P26 610 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 SLC13A1Q9BZW2 595 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms