RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 RNF187Q5TA31 235 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 WNT8AQ9H1J5 351 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 CD2APQ9Y5K6 639 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ALG6Q9Y672 507 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 COL2A1P02458 1487 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 TISP43B9A030 160 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ACOT2P49753 483 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ZNF280AP59817 542 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 SURF1Q15526 300 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ASTE1Q2TB18 679 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 TMC2Q8TDI7 906 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 SPIRE2Q8WWL2 714 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 PSPC1Q8WXF1 523 aaKnown RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 FMO2Q99518 471 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 SELENOSQ9BQE4 189 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 BCAS3Q9H6U6 928 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ANAPC7Q9UJX3 599 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 BTNL10A8MVZ5 291 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 SUPT20HL2P0C7V6 817 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 TFAMQ00059 246 aaKnown RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 MAPK6Q16659 721 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 LMBRD2Q68DH5 695 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ARMC9Q7Z3E5 817 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 PHLDB2Q86SQ0 1253 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ACTRT1Q8TDG2 376 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 HDAC7Q8WUI4 952 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 SEPT1Q8WYJ6 367 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 RIN2Q8WYP3 895 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-213ENST00000540338 TMEM117Q9H0C3 514 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 ATP8A1Q9Y2Q0 1164 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 GGPS1O95749 300 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 GARTP22102 1010 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 IGBP1P78318 339 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 LLGL1Q15334 1064 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 GRK7Q8WTQ7 553 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 OSGEPQ9NPF4 335 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 PTPN22Q9Y2R2 807 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 DDX60LQ5H9U9 1706 aaKnown RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 EXTL3O43909 919 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 OATP04181 439 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 CCNA1P78396 465 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 SGO2Q562F6 1265 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 TMEM270Q6UE05 265 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 BCAS4Q8TDM0 211 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ELP3Q9H9T3 547 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 A1CFQ9NQ94 594 aaKnown RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 FZD1Q9UP38 647 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 PLAAQ9Y263 795 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ASTN2O75129 1339 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 PODXLO00592 558 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 SGPL1O95470 568 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 HNRNPH2P55795 449 aaKnown RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 SOX10P56693 466 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 LACTBP83111 547 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 PPP3CAQ08209 521 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 SEPT7Q16181 437 aaKnown RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 CARD9Q9H257 536 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ADAM22Q9P0K1 906 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 RNF181Q9P0P0 153 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 UVRAGQ9P2Y5 699 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 SALL4Q9UJQ4 1053 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 CES2O00748 559 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ATP2A1O14983 1001 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 SCP2P22307 547 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 TBXAS1P24557 533 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 TMOD1P28289 359 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 GTF2H1P32780 548 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 RFC5P40937 340 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 EFNA5P52803 228 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 DLG4P78352 724 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 B4GALNT4Q76KP1 1039 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 APBB1IPQ7Z5R6 666 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 MAP4K3Q8IVH8 894 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ZC3H3Q8IXZ2 948 aaKnown RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ANKRD36BP1Q96IX9 119 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 PSD3Q9NYI0 1048 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 WRAP73Q9P2S5 460 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-213ENST00000540338 LY75O60449 1722 aa11.56□□□□□ -0.56
CLIP1-213ENST00000540338 ECM29Q5VYK3 1845 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 FAM187AA6NFU0 413 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 DAPK3O43293 454 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CATSPERGQ6ZRH7 1159 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 SLC20A1Q8WUM9 679 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 NLRP4Q96MN2 994 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 POP1Q99575 1024 aaKnown RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 MRPL4Q9BYD3 311 aaKnown RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 AGTPBP1Q9UPW5 1226 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 GINS2Q9Y248 185 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 SNX24Q9Y343 169 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 MAPK13O15264 365 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 ECEL1O95672 775 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 GZMAP12544 262 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CHRNA3P32297 505 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 MAN1A1P33908 653 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 HOXD13P35453 343 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 COPB2P35606 906 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 UGCGQ16739 394 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 PHLDB3Q6NSJ2 640 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 KCNV1Q6PIU1 500 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CCDC125Q86Z20 511 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms