RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 EPHX3Q9H6B9 360 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 TLE6Q9H808 572 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 PRMT7Q9NVM4 692 aaPredicted RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 C2orf16Q68DN1 1984 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 CITO14578 2027 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 CLASP2O75122 1294 aaKnown RBP11.76□□□□□ -0.53
CD44-227ENST00000528086 CTSAP10619 480 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 PLCG1P19174 1290 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 PROZP22891 400 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 MARCKSP29966 332 aaPredicted RBP11.76□□□□□ -0.53
CD44-227ENST00000528086 PPM1AP35813 382 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 ALDH7A1P49419 539 aaKnown RBP11.76□□□□□ -0.53
CD44-227ENST00000528086 ZP2Q05996 745 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 COASYQ13057 564 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 PKP1Q13835 747 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 SMAD2Q15796 467 aaKnown RBP11.76□□□□□ -0.53
CD44-227ENST00000528086 EP400NLQ6ZTU2 488 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 VPS52Q8N1B4 723 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 TMEM161BQ8NDZ6 487 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 MICAL1Q8TDZ2 1067 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 SLC22A17Q8WUG5 538 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 SUSD6Q92537 303 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 KIFAP3Q92845 792 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 ZBTB45Q96K62 511 aaPredicted RBP11.76□□□□□ -0.53
CD44-227ENST00000528086 ACO2Q99798 780 aaKnown RBP11.76□□□□□ -0.53
CD44-227ENST00000528086 RAB34Q9BZG1 259 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 C11orf16Q9NQ32 467 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 SNTG2Q9NY99 539 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 GIT1Q9Y2X7 761 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 IRAK3Q9Y616 596 aa11.76□□□□□ -0.53
CD44-227ENST00000528086 SLC16A4O15374 487 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 STX6O43752 255 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 RECQL4O94761 1208 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 LIG1P18858 919 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 PRPF4BQ13523 1007 aaKnown RBP11.75□□□□□ -0.53
CD44-227ENST00000528086 MCM6Q14566 821 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 PTPN14Q15678 1187 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 MAPK6Q16659 721 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 PDE12Q6L8Q7 609 aaKnown RBP11.75□□□□□ -0.53
CD44-227ENST00000528086 TMC7Q7Z402 723 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 ZBTB8OSQ8IWT0 167 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 CNNM3Q8NE01 707 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 DEPTORQ8TB45 409 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 REEP2Q9BRK0 252 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 TMEM175Q9BSA9 504 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 TARS2Q9BW92 718 aaKnown RBP11.75□□□□□ -0.53
CD44-227ENST00000528086 GPR62Q9BZJ7 368 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 CCSER1Q9C0I3 900 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 C2orf40Q9H1Z8 148 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 TMEM134Q9H6X4 195 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 NGRNQ9NPE2 291 aaKnown RBP11.75□□□□□ -0.53
CD44-227ENST00000528086 ENTPD7Q9NQZ7 604 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 CD207Q9UJ71 328 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 PRG3Q9Y2Y8 225 aaPredicted RBP11.75□□□□□ -0.53
CD44-227ENST00000528086 STK24Q9Y6E0 443 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 MTCL1Q9Y4B5 1905 aaKnown RBP11.75□□□□□ -0.53
CD44-227ENST00000528086 MYO10Q9HD67 2058 aa11.75□□□□□ -0.53
CD44-227ENST00000528086 ANK1P16157 1881 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 DENND4AQ7Z401 1863 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 N4BP3O15049 544 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 NCK2O43639 380 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 CXCL14O95715 111 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 MAPTP10636 758 aaKnown RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 NDUFV1P49821 464 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 ZNF131P52739 623 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 CEBPZQ03701 1054 aaKnown RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 RNASELQ05823 741 aaKnown RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 SMAD4Q13485 552 aaKnown RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 GIT2Q14161 759 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 PPP2R5AQ15172 486 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 ATF7IP2Q5U623 682 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 KIAA0319Q5VV43 1072 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 LLGL2Q6P1M3 1020 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 ALKAL1Q6UXT8 129 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 URGCPQ8TCY9 931 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 SPIRE2Q8WWL2 714 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 RSPH1Q8WYR4 309 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 RAD54LQ92698 747 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 KCNN1Q92952 543 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 TMEM169Q96HH4 297 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 CHAMP1Q96JM3 812 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 B3GALT6Q96L58 329 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 AK8Q96MA6 479 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 ZMAT2Q96NC0 199 aaKnown RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 CDT1Q9H211 546 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 IKZF4Q9H2S9 585 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 KANSL3Q9P2N6 904 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 TNFSF13BQ9Y275 285 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 USP15Q9Y4E8 981 aaPredicted RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 SRPRBQ9Y5M8 271 aaKnown RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 HCFC2Q9Y5Z7 792 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 MORC2Q9Y6X9 1032 aaPredicted RBP11.74□□□□□ -0.53
CD44-227ENST00000528086 ZMYM2Q9UBW7 1377 aa11.74□□□□□ -0.53
CD44-227ENST00000528086 CCDC169A6NNP5 214 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 K7ERI5 159 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 TECTAO75443 2155 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 ALDH2P05091 517 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 SSBP05455 408 aaKnown RBP eCLIP11.73□□□□□ -0.53
CD44-227ENST00000528086 CNPP09543 421 aaKnown RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 PLS3P13797 630 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms