RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 GNAQP50148 359 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 BNIP1Q12981 228 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 ITGA7Q13683 1181 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 KHDC1Q4VXA5 237 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 HS2ST1Q7LGA3 356 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 PEX5LQ8IYB4 626 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 GUF1Q8N442 669 aaKnown RBP10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 ATP6V0A1Q93050 837 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 SPO11Q9Y5K1 396 aa10.78□□□□□ -0.68
PDGFRB-207ENST00000520579 RIC1Q4ADV7 1423 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 CLDN3O15551 220 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 STARD3NLO95772 234 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 CALB2P22676 271 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 HNRNPH3P31942 346 aaKnown RBP10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 ARPC4P59998 168 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 TAF1BQ53T94 588 aaPredicted RBP10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 SH2D4BQ5SQS7 431 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 C6orf183Q5T699 404 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 DCAF12L1Q5VU92 463 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 SNX30Q5VWJ9 437 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 GSTA5Q7RTV2 222 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 KRT27Q7Z3Y8 459 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 SLC51AQ86UW1 340 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 SMC1BQ8NDV3 1235 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 IWS1Q96ST2 819 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 MPHOSPH6Q99547 160 aaKnown RBP10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 DRC3Q9H069 523 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 SEL1LQ9UBV2 794 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 USTQ9Y2C2 406 aa10.77□□□□□ -0.68
PDGFRB-207ENST00000520579 FLT1P17948 1338 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 RPTORQ8N122 1335 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 RSPH10B2B2RC85 870 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 RIPK2O43353 540 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 PEX11AO75192 247 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 DDAH1O94760 285 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 USP1O94782 785 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 RSPH10BP0C881 870 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 FOXN2P32314 431 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 PSMC1P62191 440 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 KPNB1Q14974 876 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SMAD1Q15797 465 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SLC35G1Q2M3R5 365 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SEL1L2Q5TEA6 688 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 TTC27Q6P3X3 843 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 DSTYKQ6XUX3 929 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 MAP7D3Q8IWC1 876 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 CFAP61Q8NHU2 1237 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 ACTRT1Q8TDG2 376 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SCG3Q8WXD2 468 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 HAUS1Q96CS2 278 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 HIC2Q96JB3 615 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SMC6Q96SB8 1091 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SLC39A3Q9BRY0 314 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 CRNKL1Q9BZJ0 848 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 SLITRK6Q9H5Y7 841 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 KLHL11Q9NVR0 708 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 WASF2Q9Y6W5 498 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 ZNF335Q9H4Z2 1342 aaPredicted RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 KIAA0391O15091 583 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 AGTP01019 485 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 TROVE2P10155 538 aaKnown RBP eCLIP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 CA4P22748 312 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 MTDHQ86UE4 582 aaKnown RBP10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 PPFIBP2Q8ND30 876 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 STK32AQ8WU08 396 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 KIFAP3Q92845 792 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 EPB41L4BQ9H329 900 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 VPS37BQ9H9H4 285 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 ARMCX1Q9P291 453 aa10.77□□□□□ -0.69
PDGFRB-207ENST00000520579 TIMM44O43615 452 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 CSF1RP07333 972 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 HDAC4P56524 1084 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 NSUN2Q08J23 767 aaKnown RBP eCLIP10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 ZDHHC24Q6UX98 284 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 SLC20A1Q8WUM9 679 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 CNKSR1Q969H4 720 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 ZNF653Q96CK0 615 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 SH3GL1Q99961 368 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 SHCBP1LQ9BZQ2 653 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 ALG6Q9Y672 507 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 GOLGB1Q14789 3259 aaKnown RBP10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 RGPD2P0DJD1 1756 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 TPBGLP0DKB5 382 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 SLURP2P0DP57 97 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 MYBP10242 640 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 PIK3CAP42336 1068 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 MAPK7Q13164 816 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 EPC2Q52LR7 807 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 CAVIN4Q5BKX8 364 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 KAZNQ674X7 775 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 ZFAND2BQ8WV99 257 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 RAD54LQ92698 747 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 RXFP1Q9HBX9 757 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 DCP1AQ9NPI6 582 aaPredicted RBP10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 TXLNGQ9NUQ3 528 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 ZBTB21Q9ULJ3 1066 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 AKAP12Q02952 1782 aa10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 AFPP02771 609 aaKnown RBP10.76□□□□□ -0.69
PDGFRB-207ENST00000520579 PAEPP09466 180 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms