RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 VN1R3Q9BXE9 311 aa12.8□□□□□ -0.36
SH3RF1-205ENST00000511421 TMEM134Q9H6X4 195 aa12.8□□□□□ -0.36
SH3RF1-205ENST00000511421 KMT5AQ9NQR1 393 aa12.8□□□□□ -0.36
SH3RF1-205ENST00000511421 ENTPD7Q9NQZ7 604 aa12.8□□□□□ -0.36
SH3RF1-205ENST00000511421 MUC3AQ02505 3323 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 ZMYM2Q9UBW7 1377 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 NPHP3-ACAD11A0A0J9YXS1 232 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 NRP1O14786 923 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 ALDH2P05091 517 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 PLS3P13797 630 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 IL9P15248 144 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 KCNC3Q14003 757 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 SLC39A14Q15043 492 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 ATF7IP2Q5U623 682 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 PTCRAQ6ISU1 281 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 TMC7Q7Z402 723 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 MRPL43Q8N983 215 aaKnown RBP12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 VN1R2Q8NFZ6 395 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 RAD54LQ92698 747 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 MSLNLQ96KJ4 702 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 FAM193BQ96PV7 902 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 CDCA3Q99618 268 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 ZBP1Q9H171 429 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 SNTG2Q9NY99 539 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 KLK14Q9P0G3 267 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 CLEC1BQ9P126 229 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 PARP2Q9UGN5 583 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 FAN1Q9Y2M0 1017 aa12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 RBM19Q9Y4C8 960 aaKnown RBP12.79□□□□□ -0.36
SH3RF1-205ENST00000511421 PHLPP2Q6ZVD8 1323 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 C2orf71A6NGG8 1288 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 SLC16A4O15374 487 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 NASPP49321 788 aaPredicted RBP12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 RBM10P98175 930 aaKnown RBP12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 CACNB1Q02641 598 aaPredicted RBP12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 MCM6Q14566 821 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 TMEM132AQ24JP5 1023 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 PUS10Q3MIT2 529 aaKnown RBP12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 GPBP1Q86WP2 473 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 VPS52Q8N1B4 723 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 TMEM161BQ8NDZ6 487 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 ACO2Q99798 780 aaKnown RBP12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 ADPGKQ9BRR6 497 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 CXCL16Q9H2A7 254 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 PTPRHQ9HD43 1115 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 MARCH5Q9NX47 278 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 DAXXQ9UER7 740 aaPredicted RBP12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 TNFSF13BQ9Y275 285 aa12.78□□□□□ -0.36
SH3RF1-205ENST00000511421 TNFRSF10AO00220 468 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 RECQL4O94761 1208 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 EFEMP2O95967 443 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 CTSAP10619 480 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 NDUFV1P49821 464 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 SMC1AQ14683 1233 aaKnown RBP12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 CLUL1Q15846 466 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 DCAF4L1Q3SXM0 396 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 TMEM184AQ6ZMB5 413 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 KCNN1Q92952 543 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 REEP2Q9BRK0 252 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 KCNG1Q9UIX4 513 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 ODF2LQ9ULJ1 636 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 BARX2Q9UMQ3 279 aaPredicted RBP12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 IRAK3Q9Y616 596 aa12.77□□□□□ -0.36
SH3RF1-205ENST00000511421 ABLIM1O14639 778 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 PTGESO14684 152 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 MBTPS2O43462 519 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 CXCL14O95715 111 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 HSP90AA1P07900 732 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 MAPTP10636 758 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 PDIA4P13667 645 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 PROZP22891 400 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 DDIT3P35638 169 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 GRIK3Q13003 919 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 COASYQ13057 564 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 DHX8Q14562 1220 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 FAM178BQ8IXR5 827 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 LINC00301Q8NCQ3 95 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 RASSF8Q8NHQ8 419 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 AUTS2Q8WXX7 1259 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 LARP4BQ92615 738 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 TARS2Q9BW92 718 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 MRPL4Q9BYD3 311 aaKnown RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 CD207Q9UJ71 328 aa12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 PRG3Q9Y2Y8 225 aaPredicted RBP12.77□□□□□ -0.37
SH3RF1-205ENST00000511421 FSD2A1L4K1 749 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 F8W810 466 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 CLASP2O75122 1294 aaKnown RBP12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 ZSCAN22P10073 491 aaPredicted RBP12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 OR1G1P47890 313 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 ZNF131P52739 623 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 SMTNP53814 917 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 NCKAP1LP55160 1127 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 SMAD4Q13485 552 aaKnown RBP12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 PKP1Q13835 747 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 GIT2Q14161 759 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 NAB2Q15742 525 aa12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 FOXD4L5Q5VV16 416 aaPredicted RBP12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 RNF168Q8IYW5 571 aaPredicted RBP12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 KRI1Q8N9T8 703 aaKnown RBP12.76□□□□□ -0.37
SH3RF1-205ENST00000511421 SPRYD3Q8NCJ5 442 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms