RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	PITRM1	Q5JRX3	1037 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	DPY19L2P1	Q6NXN4	242 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	ABHD15	Q6UXT9	468 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	ARHGEF19	Q8IW93	802 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	SNX33	Q8WV41	574 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	SERHL2	Q9H4I8	314 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	AKIP1	Q9NQ31	210 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	TRPM5	Q9NZQ8	1165 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	CDY2A	Q9Y6F7	541 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	MRPL42	Q9Y6G3	142 aa	Known RBP	5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	ZMYM3	Q14202	1370 aa		5.01	□□□□□ -1.61
CBX3-208	ENST00000497498	DIRC3	C9JPN6	131 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	RAB11FIP3	O75154	756 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	GAST	P01350	101 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	CLEC2L	P0C7M8	214 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	FBL	P22087	321 aa	Known RBP	5	□□□□□ -1.61
CBX3-208	ENST00000497498	BMPR1A	P36894	532 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	ZEB1	P37275	1124 aa	Predicted RBP	5	□□□□□ -1.61
CBX3-208	ENST00000497498	BEAN1	Q3B7T3	259 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	HECTD2	Q5U5R9	776 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	ANKS6	Q68DC2	871 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	CCDC62	Q6P9F0	684 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498		Q6YL49	198 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	JAZF1	Q86VZ6	243 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	BEND2	Q8NDZ0	799 aa		5	□□□□□ -1.61
CBX3-208	ENST00000497498	CDC5L	Q99459	802 aa	Known RBP	5	□□□□□ -1.61
CBX3-208	ENST00000497498	TBKBP1	A7MCY6	615 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	PRAMEF4	O60810	478 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	ITGA10	O75578	1167 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	NCR1	O76036	304 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	NUDT3	O95989	172 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	BPI	P17213	487 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	CTSS	P25774	331 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	RNASE9	P60153	205 aa	Known RBP	4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	NHLH2	Q02577	135 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	BMT2	Q1RMZ1	405 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	PRIMA1	Q86XR5	153 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	PLXDC1	Q8IUK5	500 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	OR10H5	Q8NGA6	315 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	PAWR	Q96IZ0	340 aa	Known RBP	4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	KCTD10	Q9H3F6	313 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	CYP4F11	Q9HBI6	524 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	SPON1	Q9HCB6	807 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	SYBU	Q9NX95	663 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	GPRC5D	Q9NZD1	345 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	MAPRE3	Q9UPY8	281 aa		4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	NOC2L	Q9Y3T9	749 aa	Known RBP	4.99	□□□□□ -1.61
CBX3-208	ENST00000497498	NDUFA10	O95299	355 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	LPL	P06858	475 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	RBP3	P10745	1247 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	MGAT1	P26572	445 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	LGALS4	P56470	323 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	PDCD1	Q15116	288 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	DHCR24	Q15392	516 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	ATP13A4	Q4VNC1	1196 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	METRNL	Q641Q3	311 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	EFCAB12	Q6NXP0	572 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	OLFML1	Q6UWY5	402 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	LEO1	Q8WVC0	666 aa	Predicted RBP	4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	CEP95	Q96GE4	821 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	TEX101	Q9BY14	249 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	WDR11	Q9BZH6	1224 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	SYNPO2L	Q9H987	977 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	ANKFY1	Q9P2R3	1169 aa		4.98	□□□□□ -1.61
CBX3-208	ENST00000497498	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	MARCH11	A6NNE9	402 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	ZAR1L	A6NP61	321 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	ZNF185	O15231	689 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	PDE8A	O60658	829 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	CRHR1	P34998	444 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	USP14	P54578	494 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	FSCN1	Q16658	493 aa	Known RBP	4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	PDCD4	Q53EL6	469 aa	Known RBP	4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	CT83	Q5H943	113 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	PDZD4	Q76G19	769 aa	Predicted RBP	4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	MDM1	Q8TC05	714 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	VOPP1	Q96AW1	172 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	RIOX1	Q9H6W3	641 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	TOPORS	Q9NS56	1045 aa	Predicted RBP	4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	RPTOR	Q8N122	1335 aa		4.97	□□□□□ -1.61
CBX3-208	ENST00000497498	ENPP3	O14638	875 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	ZEB2	O60315	1214 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	MYCLP1	P12525	358 aa	Predicted RBP	4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	FLT3LG	P49771	235 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	MFSD14B	Q5SR56	506 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	CPEB3	Q8NE35	698 aa	Known RBP	4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	ZNF480	Q8WV37	535 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	LINC00476	Q8WZB0	136 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	TFAP2C	Q92754	450 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	EAF2	Q96CJ1	260 aa	Predicted RBP	4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	COQ10A	Q96MF6	247 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	POGK	Q9P215	609 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	ZNHIT2	Q9UHR6	403 aa		4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	EPN1	Q9Y6I3	576 aa	Predicted RBP	4.96	□□□□□ -1.62
CBX3-208	ENST00000497498	PIPSL	A2A3N6	862 aa		4.95	□□□□□ -1.62
CBX3-208	ENST00000497498	PJA2	O43164	708 aa		4.95	□□□□□ -1.62
CBX3-208	ENST00000497498	PHF2	O75151	1096 aa		4.95	□□□□□ -1.62
CBX3-208	ENST00000497498	SPATA31D3	P0C874	917 aa		4.95	□□□□□ -1.62
CBX3-208	ENST00000497498	ENPP1	P22413	925 aa		4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms