RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 TMEM175Q9BSA9 504 aa23.32■■□□□ 1.32
LIME1-207ENST00000489212 TIPINQ9BVW5 301 aa23.32■■□□□ 1.32
LIME1-207ENST00000489212 KLK14Q9P0G3 267 aa23.32■■□□□ 1.32
LIME1-207ENST00000489212 PARP2Q9UGN5 583 aa23.32■■□□□ 1.32
LIME1-207ENST00000489212 K7ERI5 159 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 TNFRSF10AO00220 468 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 PLCG1P19174 1290 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 NDUFV1P49821 464 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 CACNB1Q02641 598 aaPredicted RBP23.31■■□□□ 1.32
LIME1-207ENST00000489212 DSC1Q08554 894 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 DDX53Q86TM3 631 aaKnown RBP23.31■■□□□ 1.32
LIME1-207ENST00000489212 VPS52Q8N1B4 723 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 EPSTI1Q96J88 318 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 MSLNLQ96KJ4 702 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 CLIC6Q96NY7 704 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 ZBP1Q9H171 429 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 ZSCAN16Q9H4T2 348 aaPredicted RBP23.31■■□□□ 1.32
LIME1-207ENST00000489212 KMT5AQ9NQR1 393 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 SNTG2Q9NY99 539 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 BARX2Q9UMQ3 279 aaPredicted RBP23.31■■□□□ 1.32
LIME1-207ENST00000489212 PHLPP2Q6ZVD8 1323 aa23.31■■□□□ 1.32
LIME1-207ENST00000489212 CARNS1A5YM72 827 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 C2orf71A6NGG8 1288 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 NRP1O14786 923 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 SLC16A4O15374 487 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 ALDH2P05091 517 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 ATF7IP2Q5U623 682 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 MRPL43Q8N983 215 aaKnown RBP23.3■■□□□ 1.32
LIME1-207ENST00000489212 AUTS2Q8WXX7 1259 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 CDCA3Q99618 268 aaPredicted RBP23.3■■□□□ 1.32
LIME1-207ENST00000489212 CCSER1Q9C0I3 900 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 CXCL16Q9H2A7 254 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 TMEM134Q9H6X4 195 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 C17orf75Q9HAS0 396 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 MARCH5Q9NX47 278 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 KCND2Q9NZV8 630 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 FAN1Q9Y2M0 1017 aa23.3■■□□□ 1.32
LIME1-207ENST00000489212 SRPRBQ9Y5M8 271 aaKnown RBP23.3■■□□□ 1.32
LIME1-207ENST00000489212 ZMYM2Q9UBW7 1377 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 PLS3P13797 630 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 KCNC3Q14003 757 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 DHX8Q14562 1220 aaKnown RBP23.29■■□□□ 1.32
LIME1-207ENST00000489212 MCM6Q14566 821 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 SMC1AQ14683 1233 aaKnown RBP23.29■■□□□ 1.32
LIME1-207ENST00000489212 PUS10Q3MIT2 529 aaKnown RBP23.29■■□□□ 1.32
LIME1-207ENST00000489212 SPIRE2Q8WWL2 714 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 RAD54LQ92698 747 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 ADPGKQ9BRR6 497 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 NTPCRQ9BSD7 190 aaKnown RBP23.29■■□□□ 1.32
LIME1-207ENST00000489212 PRG3Q9Y2Y8 225 aaPredicted RBP23.29■■□□□ 1.32
LIME1-207ENST00000489212 MYH15Q9Y2K3 1946 aa23.29■■□□□ 1.32
LIME1-207ENST00000489212 F8W810 466 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 RECQL4O94761 1208 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 OR1G1P47890 313 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 GPBP1Q86WP2 473 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 RASSF8Q8NHQ8 419 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 ACO2Q99798 780 aaKnown RBP23.28■■□□□ 1.32
LIME1-207ENST00000489212 CD207Q9UJ71 328 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 TNFSF13BQ9Y275 285 aa23.28■■□□□ 1.32
LIME1-207ENST00000489212 RBM19Q9Y4C8 960 aaKnown RBP23.28■■□□□ 1.32
LIME1-207ENST00000489212 MBTPS2O43462 519 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 CXCL14O95715 111 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 CTSAP10619 480 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 SLC39A14Q15043 492 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 DCAF4L1Q3SXM0 396 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 FAM178BQ8IXR5 827 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 TMEM161BQ8NDZ6 487 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 REEP2Q9BRK0 252 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 TARS2Q9BW92 718 aaKnown RBP23.27■■□□□ 1.32
LIME1-207ENST00000489212 PTPRHQ9HD43 1115 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 CD320Q9NPF0 282 aa23.27■■□□□ 1.32
LIME1-207ENST00000489212 MORC2Q9Y6X9 1032 aaPredicted RBP23.27■■□□□ 1.32
LIME1-207ENST00000489212 PTGESO14684 152 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 NASPP49321 788 aaPredicted RBP23.26■■□□□ 1.31
LIME1-207ENST00000489212 GRIK3Q13003 919 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 COASYQ13057 564 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 SMAD4Q13485 552 aaKnown RBP23.26■■□□□ 1.31
LIME1-207ENST00000489212 FOXD4L5Q5VV16 416 aaPredicted RBP23.26■■□□□ 1.31
LIME1-207ENST00000489212 LLGL2Q6P1M3 1020 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 SPRYD3Q8NCJ5 442 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 FOXD4L4Q8WXT5 416 aaPredicted RBP23.26■■□□□ 1.31
LIME1-207ENST00000489212 RPS6KC1Q96S38 1066 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 MRPL4Q9BYD3 311 aaKnown RBP23.26■■□□□ 1.31
LIME1-207ENST00000489212 CACNG4Q9UBN1 327 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 GDAQ9Y2T3 454 aa23.26■■□□□ 1.31
LIME1-207ENST00000489212 TRIP11Q15643 1979 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.25■■□□□ 1.31
LIME1-207ENST00000489212 ABLIM1O14639 778 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 CLASP2O75122 1294 aaKnown RBP23.25■■□□□ 1.31
LIME1-207ENST00000489212 EFEMP2O95967 443 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 HSP90AA1P07900 732 aaKnown RBP23.25■■□□□ 1.31
LIME1-207ENST00000489212 MAPTP10636 758 aaKnown RBP23.25■■□□□ 1.31
LIME1-207ENST00000489212 CA8P35219 290 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 GIT2Q14161 759 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 SMAD2Q15796 467 aaKnown RBP23.25■■□□□ 1.31
LIME1-207ENST00000489212 TMEM184AQ6ZMB5 413 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 TAS1R1Q7RTX1 841 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 CEP120Q8N960 986 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 SMRP1Q8NCR6 262 aa23.25■■□□□ 1.31
LIME1-207ENST00000489212 LARP4BQ92615 738 aaKnown RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms