RNA–Protein interactions for RNA: ENST00000488897.5

COL16A1-215, Transcript of collagen type XVI alpha 1 chain, human

TSL 1 (best)

Gene COL16A1, Length 2,423 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL16A1-215	ENST00000488897	GUCY2D	Q02846	1103 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	IFI16	Q16666	785 aa	Known RBP	19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	ARSH	Q5FYA8	562 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	POTEG	Q6S5H5	508 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	METTL7B	Q6UX53	244 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	CXCL17	Q6UXB2	119 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	CATSPER3	Q86XQ3	398 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	MREG	Q8N565	214 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	ERMN	Q8TAM6	284 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	TAF4B	Q92750	862 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	EIF2AK1	Q9BQI3	630 aa	Known RBP	19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	DDX20	Q9UHI6	824 aa	Known RBP	19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	TRAF3IP3	Q9Y228	551 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	STK24	Q9Y6E0	443 aa		19.83	■□□□□ 0.76
COL16A1-215	ENST00000488897	BACH1	O14867	736 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	EIF3H	O15372	352 aa	Known RBP eCLIP	19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	GH1	P01241	217 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	TGFB3	P10600	412 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	RARB	P10826	455 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	CARS	P49589	748 aa	Known RBP	19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	TNNC1	P63316	161 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	NEDD9	Q14511	834 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	CFAP58	Q5T655	872 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	ZIM3	Q96PE6	472 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	MAF1	Q9H063	256 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	ZHX3	Q9H4I2	956 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	ARMCX3	Q9UH62	379 aa	Predicted RBP	19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	NFU1	Q9UMS0	254 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	SLITRK3	O94933	977 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	GNGT1	P63211	74 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	TTMP	Q5BVD1	217 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	B3GNT9	Q6UX72	402 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	IQCK	Q8N0W5	287 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	WHAMM	Q8TF30	809 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	ARL8A	Q96BM9	186 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	KRT12	Q99456	494 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	SENP7	Q9BQF6	1050 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	TBC1D22B	Q9NU19	505 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	TCEAL9	Q9UHQ7	104 aa		19.82	■□□□□ 0.76
COL16A1-215	ENST00000488897	ZNF862	O60290	1169 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	MYL3	P08590	195 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	SPATA31C1	P0DKV0	1188 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	ATP4A	P20648	1035 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	PPM1E	Q8WY54	764 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	IFT81	Q8WYA0	676 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	ZNF333	Q96JL9	665 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	CDHR1	Q96JP9	859 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	SPAG5	Q96R06	1193 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	RIT2	Q99578	217 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	RNPEP	Q9H4A4	650 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	DNM3	Q9UQ16	869 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	EBAG9	O00559	213 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	TBX3	O15119	743 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	MAFG	O15525	162 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	CALU	O43852	315 aa	Predicted RBP	19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	AFP	P02771	609 aa	Known RBP	19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	ANXA13	P27216	316 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	DNA2	P51530	1060 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	RPS6KA1	Q15418	735 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	ENOX2	Q16206	610 aa	Known RBP	19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	KNOP1	Q1ED39	458 aa	Known RBP	19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	ABHD15	Q6UXT9	468 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	IRF2BP2	Q7Z5L9	587 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	EFCAB13	Q8IY85	973 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	USP38	Q8NB14	1042 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	TRAPPC12	Q8WVT3	735 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	PBK	Q96KB5	322 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	CCDC43	Q96MW1	224 aa	Known RBP	19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	PACSIN1	Q9BY11	444 aa		19.81	■□□□□ 0.76
COL16A1-215	ENST00000488897	MMP3	P08254	477 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	PRMT2	P55345	433 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	PPP2R5C	Q13362	524 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	GIT2	Q14161	759 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	PLA2G4F	Q68DD2	849 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	CD302	Q8IX05	232 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	SYT2	Q8N9I0	419 aa	Predicted RBP	19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	BCAS4	Q8TDM0	211 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	GLG1	Q92896	1179 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	LAMA3	Q16787	3333 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	PDXK	O00764	312 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	UCHL3	P15374	230 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	PTK2	Q05397	1052 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	KCNA10	Q16322	511 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	FSCN1	Q16658	493 aa	Known RBP	19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	TEX2	Q8IWB9	1127 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	EIF1AD	Q8N9N8	165 aa	Known RBP	19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	TMEM59L	Q9UK28	342 aa		19.8	■□□□□ 0.76
COL16A1-215	ENST00000488897	GRIN2D	O15399	1336 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	ADAMTS4	O75173	837 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	DUSP11	O75319	330 aa	Known RBP	19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	RPA1	P27694	616 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	NPEPPS	P55786	919 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	EXOC3L4	Q17RC7	722 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	DIS3L	Q8TF46	1054 aa	Known RBP	19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	BBX	Q8WY36	941 aa	Predicted RBP	19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	LXN	Q9BS40	222 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	AP5M1	Q9H0R1	490 aa		19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	METTL14	Q9HCE5	456 aa	Known RBP	19.79	■□□□□ 0.76
COL16A1-215	ENST00000488897	PACSIN2	Q9UNF0	486 aa	Predicted RBP	19.79	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms