RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 HOXA11P31270 313 aaPredicted RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 TFF2Q03403 129 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 RNASELQ05823 741 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 SNW1Q13573 536 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 CUL4BQ13620 913 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 BTG3Q14201 252 aaPredicted RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 KCNB1Q14721 858 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 NOLC1Q14978 699 aaKnown RBP eCLIP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 AAK1Q2M2I8 961 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 SPOUT1Q5T280 376 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 L1TD1Q5T7N2 865 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 MPZL3Q6UWV2 235 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.05□□□□□ -0.961e-6■■■■□ 20.8
SF3A1-208ENST00000485618 MRPL10Q7Z7H8 261 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 CMTR2Q8IYT2 770 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 FIBCD1Q8N539 461 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 ENGASEQ8NFI3 743 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 SYAP1Q96A49 352 aaPredicted RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 SAMD11Q96NU1 681 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 TSPAN18Q96SJ8 248 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 ACO2Q99798 780 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 KIFC3Q9BVG8 833 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 TMEM117Q9H0C3 514 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 CCDC113Q9H0I3 377 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 BLZF1Q9H2G9 400 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 GOLPH3LQ9H4A5 285 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 CERS4Q9HA82 394 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 KIAA1586Q9HCI6 787 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 STK39Q9UEW8 545 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 GIT1Q9Y2X7 761 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 MYH11P35749 1972 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 COL4A4P53420 1690 aaPredicted RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 TET1Q8NFU7 2136 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 TTC28Q96AY4 2481 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 RFXAPO00287 272 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 GADD45BO75293 160 aaPredicted RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 DGKIO75912 1065 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 NPTXRO95502 500 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 PIGRP01833 764 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 RPL13P26373 211 aaKnown RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 NMT1P30419 496 aaKnown RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 KCNQ1P51787 676 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 POU5F1Q01860 360 aaKnown RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 BMS1Q14692 1282 aaKnown RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 AMHR2Q16671 573 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 ZNF568Q3ZCX4 644 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 NT5DC1Q5TFE4 455 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 FAM117BQ6P1L5 589 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 USP37Q86T82 979 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 RTN4RL1Q86UN2 441 aaPredicted RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 MAP4K3Q8IVH8 894 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 ZNF507Q8TCN5 953 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 LRRC15Q8TF66 581 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 POMGNT1Q8WZA1 660 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 VWCEQ96DN2 955 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 CPB2Q96IY4 423 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 ACAP3Q96P50 834 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 RPS6KC1Q96S38 1066 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 MSTO1Q9BUK6 570 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 TARS2Q9BW92 718 aaKnown RBP9.04□□□□□ -0.96
SF3A1-208ENST00000485618 GBP3Q9H0R5 595 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 PDZD7Q9H5P4 517 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 PLEKHA5Q9HAU0 1116 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 TBC1D7Q9P0N9 293 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 ANKFY1Q9P2R3 1169 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 PARP2Q9UGN5 583 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 PCDHB12Q9Y5F1 795 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 SCN5AQ14524 2016 aa9.04□□□□□ -0.96
SF3A1-208ENST00000485618 EPOPA6NHQ4 379 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 TBKBP1A7MCY6 615 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 B4GALT5O43286 388 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 XPOTO43592 962 aaKnown RBP9.03□□□□□ -0.96
SF3A1-208ENST00000485618 CALUO43852 315 aaPredicted RBP9.03□□□□□ -0.96
SF3A1-208ENST00000485618 MGEA5O60502 916 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 RHOBTB3O94955 611 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 RB1P06400 928 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 CLTAP09496 248 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 GARTP22102 1010 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 ALDH7A1P49419 539 aaKnown RBP9.03□□□□□ -0.96
SF3A1-208ENST00000485618 DEFB103AP81534 67 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 HTRA4P83105 476 aaPredicted RBP9.03□□□□□ -0.96
SF3A1-208ENST00000485618 MCL1Q07820 350 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 DPYDQ12882 1025 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 KNOP1Q1ED39 458 aaKnown RBP9.03□□□□□ -0.96
SF3A1-208ENST00000485618 KMT5BQ4FZB7 885 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 NOMO2Q5JPE7 1267 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 ZBTB33Q86T24 672 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 CD302Q8IX05 232 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 GRAMD1CQ8IYS0 662 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 LRRC43Q8N309 656 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 TRIML1Q8N9V2 468 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 ARNTL2Q8WYA1 636 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 C1QTNF1Q9BXJ1 281 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 RSAD1Q9HA92 442 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 SLC39A2Q9NP94 309 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 SLC38A7Q9NVC3 462 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 R3HCC1Q9Y3T6 440 aaKnown RBP9.03□□□□□ -0.96
SF3A1-208ENST00000485618 IPPQ9Y573 584 aa9.03□□□□□ -0.96
SF3A1-208ENST00000485618 MTCH2Q9Y6C9 303 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms