RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 MMS19Q96T76 1030 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 GPR20Q99678 358 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 AGPAT1Q99943 283 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 NFKBIZQ9BYH8 718 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 ISCUQ9H1K1 167 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 C2orf40Q9H1Z8 148 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 SMARCAD1Q9H4L7 1026 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 PCIF1Q9H4Z3 704 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 AZI2Q9H6S1 392 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 TXNRD2Q9NNW7 524 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 ABCB6Q9NP58 842 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 UBE2TQ9NPD8 197 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-208ENST00000468792 RAB20Q9NX57 234 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 SUCLA2Q9P2R7 463 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-208ENST00000468792 HDAC6Q9UBN7 1215 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 PUF60Q9UHX1 559 aaKnown RBP8.24□□□□□ -1.09
COL6A3-208ENST00000468792 TTC7AQ9ULT0 858 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-208ENST00000468792 PCDHB8Q9UN66 801 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 ADGRA2Q96PE1 1338 aa8.24□□□□□ -1.09
COL6A3-208ENST00000468792 TISP43B9A030 160 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 K7ERI5 159 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 MAP2K7O14733 419 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 HBP1O60381 514 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 PALMO75781 387 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ZBTB48P10074 688 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TNFAIP3P21580 790 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TNFRSF8P28908 595 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 GJA5P36382 358 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TCF7P36402 384 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 GCLMP48507 274 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 LIG4P49917 911 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 BPIFB4P59827 614 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 PRPF4BQ13523 1007 aaKnown RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 LAMC2Q13753 1193 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TTLL12Q14166 644 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TTLL4Q14679 1199 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 SURF1Q15526 300 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ZNF792Q3KQV3 632 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ZACNQ401N2 412 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 MAP9Q49MG5 647 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 BEND6Q5SZJ8 279 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 PPP1R2P3Q6NXS1 205 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 GJB7Q6PEY0 223 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 MAMDC4Q6UXC1 1216 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 DLK2Q6UY11 383 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 SV2AQ7L0J3 742 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ZNF677Q86XU0 584 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 RHOT2Q8IXI1 618 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 KRT222Q8N1A0 295 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 EIF1ADQ8N9N8 165 aaKnown RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 RDH13Q8NBN7 331 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 NOA1Q8NC60 698 aaKnown RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 SPATA4Q8NEY3 305 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TPCN2Q8NHX9 752 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 DEPTORQ8TB45 409 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 LNX1Q8TBB1 728 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ACTRT1Q8TDG2 376 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 HELQQ8TDG4 1101 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ZNF526Q8TF50 670 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-208ENST00000468792 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.23□□□□□ -1.094e-7■■■■■ 58.1
COL6A3-208ENST00000468792 RFFLQ8WZ73 363 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 FAXDC2Q96IV6 333 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 MS4A4AQ96JQ5 239 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 NT5C1BQ96P26 610 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 SH2D3AQ9BRG2 576 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 PAGR1Q9BTK6 254 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 UBXN6Q9BZV1 441 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 VIPAS39Q9H9C1 493 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 VTA1Q9NP79 307 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 WDR70Q9NW82 654 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 TMEM59LQ9UK28 342 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 L1RE1Q9UN81 338 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 STXBP5LQ9Y2K9 1186 aa8.23□□□□□ -1.09
COL6A3-208ENST00000468792 ZBTB42B2RXF5 422 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 PDE2AO00408 941 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-208ENST00000468792 SRGAP2O75044 1071 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 RTN2O75298 545 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 TOM1L1O75674 476 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 KIF4AO95239 1232 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 TBC1D8O95759 1140 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 C4BPAP04003 597 aaKnown RBP8.22□□□□□ -1.09
COL6A3-208ENST00000468792 PNMA6AP0CW24 399 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-208ENST00000468792 PSEN1P49768 467 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 GALCP54803 685 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 RPS6KA1Q15418 735 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 PPP2R5EQ16537 467 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 LONRF2Q1L5Z9 754 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 ZNF484Q5JVG2 852 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 DHX37Q8IY37 1157 aaKnown RBP8.22□□□□□ -1.09
COL6A3-208ENST00000468792 RASGEF1CQ8N431 466 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 CAGE1Q8TC20 777 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 ASAP3Q8TDY4 903 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 EPS8L1Q8TE68 723 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 CTNNBL1Q8WYA6 563 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-208ENST00000468792 HES6Q96HZ4 224 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 KREMEN1Q96MU8 473 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 KIFC3Q9BVG8 833 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 PACSIN1Q9BY11 444 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 FUT8Q9BYC5 575 aa8.22□□□□□ -1.09
COL6A3-208ENST00000468792 CCDC113Q9H0I3 377 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms