RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 KYAT1Q16773 422 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 EDRF1Q3B7T1 1238 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 ANKRD40Q6AI12 368 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 PSRC1Q6PGN9 363 aaPredicted RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 FOXR2Q6PJQ5 311 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 ZNF365Q70YC5 407 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 SLC24A5Q71RS6 500 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 C16orf59Q7L2K0 433 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 EIF2AQ9BY44 585 aaKnown RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 NAT10Q9H0A0 1025 aaKnown RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 RNF216Q9NWF9 866 aaPredicted RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 PCDH10Q9P2E7 1040 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 RWDD2AQ9UIY3 292 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 AGO2Q9UKV8 859 aaKnown RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 A0A0U1RQF3 1178 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 C9IYK1 514 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 OGTO15294 1046 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 ZNF623O75123 536 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 BAIAP3O94812 1187 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 LDHAP00338 332 aaKnown RBP17.23■□□□□ 0.35
USP40-206ENST00000443711 NR3C1P04150 777 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 HARSP12081 509 aaKnown RBP17.23■□□□□ 0.35
USP40-206ENST00000443711 STX17P56962 302 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 FAM189BP81408 668 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 ANO6Q4KMQ2 910 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 ZCWPW2Q504Y3 356 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 TMEM240Q5SV17 173 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 SLC9A9Q8IVB4 645 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 TMEM174Q8WUU8 243 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 LINC01599Q8WXQ3 324 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 CBWD1Q9BRT8 395 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 HAPLN2Q9GZV7 340 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 DNAJC25Q9H1X3 360 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 PCIF1Q9H4Z3 704 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 FAM105AQ9NUU6 356 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 DMAC2Q9NW81 257 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 PCDHB2Q9Y5E7 798 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 CEP290O15078 2479 aa17.23■□□□□ 0.35
USP40-206ENST00000443711 TTC3P53804 2025 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 TRIM49BA6NDI0 452 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 MAGEA10P43363 369 aaPredicted RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 CYP2J2P51589 502 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 PMS1P54277 932 aaKnown RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 EPHB4P54760 987 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 FKBP3Q00688 224 aaKnown RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 MLLT1Q03111 559 aaPredicted RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 ADAM9Q13443 819 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 TTI2Q6NXR4 508 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 LRSAM1Q6UWE0 723 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 C11orf57Q6ZUT1 292 aaPredicted RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 MRPL10Q7Z7H8 261 aaKnown RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 ECHDC2Q86YB7 292 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 THNSL1Q8IYQ7 743 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 HACE1Q8IYU2 909 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 XXYLT1Q8NBI6 393 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 PGBD4Q96DM1 585 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.22■□□□□ 0.35
USP40-206ENST00000443711 CCDC94Q9BW85 323 aaPredicted RBP17.22■□□□□ 0.35
USP40-206ENST00000443711 KIAA1586Q9HCI6 787 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 HSPBP1Q9NZL4 362 aa17.22■□□□□ 0.35
USP40-206ENST00000443711 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.21■□□□□ 0.35
USP40-206ENST00000443711 H0YGN5 161 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 CETN3O15182 167 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 EXOC3O60645 756 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 CAVIN2O95810 425 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 EOMESO95936 686 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 CLTAP09496 248 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 NR2F2P24468 414 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 GRM5P41594 1212 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 ZNF445P59923 1031 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 TPD52L1Q16890 204 aaPredicted RBP17.21■□□□□ 0.35
USP40-206ENST00000443711 OTOP2Q7RTS6 562 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 GPD1LQ8N335 351 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 SMG8Q8ND04 991 aaKnown RBP17.21■□□□□ 0.35
USP40-206ENST00000443711 DUSP9Q99956 384 aaKnown RBP17.21■□□□□ 0.35
USP40-206ENST00000443711 ELAC1Q9H777 363 aaKnown RBP17.21■□□□□ 0.35
USP40-206ENST00000443711 IPPQ9Y573 584 aa17.21■□□□□ 0.35
USP40-206ENST00000443711 MKI67P46013 3256 aaKnown RBP17.21■□□□□ 0.35
USP40-206ENST00000443711 PDE4DIPQ5VU43 2346 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 CITO14578 2027 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 GOLGA8IPA6NC78 632 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 GOLGA8JA6NMD2 632 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 ZBBXA8MT70 800 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 EXTL3O43909 919 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 FGFR1OPO95684 399 aaKnown RBP17.2■□□□□ 0.34
USP40-206ENST00000443711 AMHP03971 560 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 STAG3L1P0CL83 205 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 ITGA4P13612 1032 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 KCNJ6P48051 423 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 CSGALNACT2Q8N6G5 542 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 ENOX1Q8TC92 643 aaKnown RBP17.2■□□□□ 0.34
USP40-206ENST00000443711 NOC3LQ8WTT2 800 aaKnown RBP17.2■□□□□ 0.34
USP40-206ENST00000443711 HERVK_113Q902F9 699 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 SAAL1Q96ER3 474 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 CEP63Q96MT8 703 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 ACAP3Q96P50 834 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 BPIFA3Q9BQP9 254 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 FAM213AQ9BRX8 229 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 MTIF3Q9H2K0 278 aaKnown RBP17.2■□□□□ 0.34
USP40-206ENST00000443711 TSPY26PQ9H489 355 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms