RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 IST1P53990 364 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 OCRLQ01968 901 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 KDSRQ06136 332 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 NNTQ13423 1086 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 PHKG1Q16816 387 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 SPDYAQ5MJ70 313 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 SPOPLQ6IQ16 392 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 MILR1Q7Z6M3 343 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 AKAP14Q86UN6 197 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 NKAIN4Q8IVV8 208 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 CD302Q8IX05 232 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 CYP4X1Q8N118 509 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 ARHGAP24Q8N264 748 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 ATP6V0D2Q8N8Y2 350 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 GALNT11Q8NCW6 608 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 PDZD8Q8NEN9 1154 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 RASSF5Q8WWW0 418 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 FATE1Q969F0 183 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 C11orf24Q96F05 449 aaPredicted RBP6.93□□□□□ -1.3
MCF2-205ENST00000437564 REXO5Q96IC2 774 aaKnown RBP6.93□□□□□ -1.3
MCF2-205ENST00000437564 TSNARE1Q96NA8 513 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 COQ7Q99807 217 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 ESYT1Q9BSJ8 1104 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 SELENOOQ9BVL4 669 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 KIAA1683Q9H0B3 1180 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 VPS11Q9H270 941 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 DENND2DQ9H6A0 471 aaPredicted RBP6.93□□□□□ -1.3
MCF2-205ENST00000437564 ABI2Q9NYB9 513 aaPredicted RBP6.93□□□□□ -1.3
MCF2-205ENST00000437564 MRPL39Q9NYK5 338 aaKnown RBP6.93□□□□□ -1.3
MCF2-205ENST00000437564 SOX13Q9UN79 622 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 HPS5Q9UPZ3 1129 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 ERVK-11Q9UQG0 969 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 PCDHGA11Q9Y5H2 935 aa6.93□□□□□ -1.3
MCF2-205ENST00000437564 BCORL1Q5H9F3 1711 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 SYNJ2BP-COX16A0A087WUM0 186 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 GOLGA8QA0A0J9YX86 632 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 PNMA6FA0A0J9YX94 578 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 CTAGE9A4FU28 777 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 GOLGA8OA6NCC3 632 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 MIF4GDA9UHW6 222 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 GOLGA8NF8WBI6 632 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 RGS13O14921 159 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 FYB1O15117 783 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 SLC22A1O15245 554 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 GPR37L1O60883 481 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 UFL1O94874 794 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 NPPAP01160 153 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 GNAI2P04899 355 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 CYP17A1P05093 508 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 MYL3P08590 195 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 PAEPP09466 180 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 DLATP10515 647 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 NR1D1P20393 614 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 VAMP1P23763 118 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 GRK2P25098 689 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 ETV1P50549 477 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 BCAP31P51572 246 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 HNRNPFP52597 415 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 NFX1Q12986 1120 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 FUT11Q495W5 492 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 BRDTQ58F21 947 aaPredicted RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 CCNJQ5T5M9 372 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 IQSEC1Q6DN90 963 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 AGMOQ6ZNB7 445 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 MARK2Q7KZI7 788 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 TBC1D1Q86TI0 1168 aaPredicted RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 IFNL3Q8IZI9 196 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 CPSF7Q8N684 471 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 ASAP3Q8TDY4 903 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 FAM167AQ96KS9 214 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 CEP170P1Q96L14 293 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 MNTQ99583 582 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 EHD1Q9H4M9 534 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 HAUS4Q9H6D7 363 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 PLGRKTQ9HBL7 147 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 MOV10Q9HCE1 1003 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 CYP4F12Q9HCS2 524 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 SELENONQ9NZV5 590 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 FNIP2Q9P278 1114 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 RWDD3Q9Y3V2 267 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.92□□□□□ -1.3
MCF2-205ENST00000437564 FAM135BQ49AJ0 1406 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 TOP2BQ02880 1626 aa6.92□□□□□ -1.3
MCF2-205ENST00000437564 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.91□□□□□ -1.3
MCF2-205ENST00000437564 C1orf232A0A0U1RR37 186 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 MAGEB16A2A368 324 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 FUOMA2VDF0 154 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 RCCD1A6NED2 376 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 ZSCAN5BA6NJL1 495 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.91□□□□□ -1.3
MCF2-205ENST00000437564 PI4K2BG5E9Z4 385 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 E2F3O00716 465 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 ENC1O14682 589 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 KDM6AO15550 1401 aaPredicted RBP6.91□□□□□ -1.3
MCF2-205ENST00000437564 RNMTO43148 476 aaKnown RBP6.91□□□□□ -1.3
MCF2-205ENST00000437564 ZBTB14O43829 449 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 AQRO60306 1485 aaKnown RBP eCLIP6.91□□□□□ -1.3
MCF2-205ENST00000437564 LGR5O75473 907 aa6.91□□□□□ -1.3
MCF2-205ENST00000437564 POP4O95707 220 aaKnown RBP6.91□□□□□ -1.3
MCF2-205ENST00000437564 GNRH1P01148 92 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms