RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FIGNQ5HY92 759 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 PPM1KQ8N3J5 372 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 NCLNQ969V3 563 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 NUP85Q9BW27 656 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ZMYM2Q9UBW7 1377 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 EIF4E1BA6NMX2 242 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 TTLL1O95922 423 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 TMTC4Q5T4D3 741 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 SDE2Q6IQ49 451 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 DARS2Q6PI48 645 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 POMGNT1Q8WZA1 660 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 FBXL5Q9UKA1 691 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 TET3O43151 1660 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 SNX2O60749 519 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 PIK3CAP42336 1068 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 TNFAIP2Q03169 654 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 FKBP9P1Q75LS8 142 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 DGKHQ86XP1 1220 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ZBTB38Q8NAP3 1195 aaPredicted RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 FAM45AQ8TCE6 357 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CARD14Q9BXL6 1004 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 UFL1O94874 794 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ALBP02768 609 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ACTN3Q08043 901 aaPredicted RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 RUNDC3AQ59EK9 446 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 FAM20AQ96MK3 541 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 PDE4DIPQ5VU43 2346 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 A0A087WXM4 84 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 K7ENM7 598 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CLPTM1O96005 669 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 PDHA1P08559 390 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 DPCR1Q3MIW9 517 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CYB5D1Q6P9G0 228 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ZNF473Q8WTR7 871 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 MCRS1Q96EZ8 462 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 NSL1Q96IY1 281 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CCT7Q99832 543 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 MOV10Q9HCE1 1003 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 RFC4P35249 363 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ZMYM1Q5SVZ6 1142 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 NOD2Q9HC29 1040 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 GPHNQ9NQX3 736 aaPredicted RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 TNRQ92752 1358 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 PSMC3P17980 439 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CTCFP49711 727 aaPredicted RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 AP1S2P56377 157 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 FCHO2Q0JRZ9 810 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 MB21D1Q8N884 522 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 C8orf58Q8NAV2 365 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 MINDY2Q8NBR6 621 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 SHCBP1Q8NEM2 672 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 TEKT4Q8WW24 435 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 KLHL4Q9C0H6 718 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ISCUQ9H1K1 167 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CNOT7Q9UIV1 285 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 KIAA1210Q9ULL0 1709 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 HNRNPDLO14979 420 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 STARD8Q92502 1023 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 EFCAB1Q9HAE3 211 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 SNRKQ9NRH2 765 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 EIF4A3P38919 411 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 COPZ1P61923 177 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 PDAP1Q13442 181 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 GCKRQ14397 625 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 CEP78Q5JTW2 689 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 NLRP4Q96MN2 994 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 AKAP7Q9P0M2 348 aaPredicted RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 H3BMM5 538 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 BUB1O43683 1085 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 RHOBTB1O94844 696 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 IFNA14P01570 189 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 KRT31Q15323 416 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 KIF19Q2TAC6 998 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 CYP4F22Q6NT55 531 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 TPH2Q8IWU9 490 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 VPS33AQ96AX1 596 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 SEC16BQ96JE7 1060 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 ASB2Q96Q27 587 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 ERAP1Q9NZ08 941 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 GRID1Q9ULK0 1009 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 ERVV-2B6SEH9 535 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 IL12RB1P42701 662 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 HIRAP54198 1017 aaPredicted RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 RPL19P84098 196 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 SLC18A3Q16572 532 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 IP6K1Q92551 441 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 WDR12Q9GZL7 423 aaKnown RBP7.57□□□□□ -1.2
VPS53-204ENST00000437048 ACTL7BQ9Y614 415 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 UGGT1Q9NYU2 1555 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 ACEP12821 1306 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 COPAP53621 1224 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 MAGEB18Q96M61 343 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 PSMB7Q99436 277 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 PCDHB8Q9UN66 801 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 A0A1W2PP64 1363 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 FRMPD1Q5SYB0 1578 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 PPARAQ07869 468 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 MIS18BP1Q6P0N0 1132 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 BLOC1S5Q8TDH9 187 aa7.57□□□□□ -1.2
VPS53-204ENST00000437048 XAGE2Q96GT9 111 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms