RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 MAD1L1Q9Y6D9 718 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 IFIT3O14879 490 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 EXOC3O60645 756 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 COL6A2P12110 1019 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 VCLP18206 1134 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NDUFA5Q16718 116 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 KLHDC10Q6PID8 442 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ATP8B4Q8TF62 1192 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NDUFA13Q9P0J0 144 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UHRF1BP1LA0JNW5 1464 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC195A0A1B0GUA6 201 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TBC1D12O60347 775 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 LIN52Q52LA3 116 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DGLUCYQ7Z3D6 616 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SLC22A8Q8TCC7 542 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ASXL2Q76L83 1435 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CYP1A2P05177 515 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CPA2P48052 419 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SGSM1Q2NKQ1 1148 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ICA1LQ8NDH6 482 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HNRNPCL2B2RXH8 293 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HNRNPCL1O60812 293 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 RPS6P62753 249 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 FOLH1Q04609 750 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MAPK11Q15759 364 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZSCAN18Q8TBC5 510 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NLRP7Q8WX94 980 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 THTPAQ9BU02 230 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HPS4Q9NQG7 708 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ERVK-7P63135 1459 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ASNSP08243 561 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MCF2P10911 925 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CCNCP24863 283 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 BPIFA3Q9BQP9 254 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DBNLQ9UJU6 430 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 USP32Q8NFA0 1604 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PGM3O95394 542 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PABPC4Q13310 644 aaKnown RBP eCLIP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 WTAPQ15007 396 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 IQSEC1Q6DN90 963 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UBE3BQ7Z3V4 1068 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 INPP5DQ92835 1189 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PHACTR3Q96KR7 559 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HNRNPABQ99729 332 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TP63Q9H3D4 680 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TIMM22Q9Y584 194 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ANKRD34BA5PLL1 514 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MAGP20916 626 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 JAK1P23458 1154 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HS6ST3Q8IZP7 471 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 IRF2BPLQ9H1B7 796 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TMEM206Q9H813 350 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TMEM120BA0PK00 339 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 F8W031 263 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 I3L4J1 428 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 E2F2Q14209 437 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF618Q5T7W0 954 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TREML1Q86YW5 311 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 FAM186BQ8IYM0 893 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ALDH16A1Q8IZ83 802 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TTC39CQ8N584 583 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 Q8N9G6 341 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 THAP9Q9H5L6 903 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 RRN3Q9NYV6 651 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 LRRIQ4A6NIV6 560 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 GAS8O95995 478 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ATXN3P54252 364 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PPP2R2BQ00005 443 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 EIF4A2Q14240 407 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NONOQ15233 471 aaKnown RBP eCLIP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 G2E3Q7L622 706 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 IER2Q9BTL4 223 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 KLHL4Q9C0H6 718 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 STK39Q9UEW8 545 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MAGI2Q86UL8 1455 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SLC9A3P48764 834 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MARSP56192 900 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 RABGAP1LQ5R372 815 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 LLPHQ9BRT6 129 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HEMGNQ9BXL5 484 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TXNDC16Q9P2K2 825 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 IP6K2Q9UHH9 426 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ERVK-11Q9UQG0 969 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HMOX2P30519 316 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 GSSP48637 474 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 KCNMA1Q12791 1236 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TBX2Q13207 712 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SH3BP5LQ7L8J4 393 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SIPA1Q96FS4 1042 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 GTF3C4Q9UKN8 822 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TAF6LQ9Y6J9 622 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ENO1P06733 434 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 AP2B1P63010 937 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 GSTM4Q03013 218 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PGS1Q32NB8 556 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CROCCP2Q86T23 111 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DIS3LQ8TF46 1054 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ATP6V1HQ9UI12 483 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ATXN2Q99700 1313 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DISP1Q96F81 1524 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms