RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 GZMAP12544 262 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 ELF3P78545 371 aaPredicted RBP13.65□□□□□ -0.22
SHMT1-205ENST00000395684 ZNF568Q3ZCX4 644 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 STRIP1Q5VSL9 837 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC25Q86WR0 208 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CEP57Q86XR8 500 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 DDX23Q9BUQ8 820 aaKnown RBP13.65□□□□□ -0.22
SHMT1-205ENST00000395684 NUP85Q9BW27 656 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 TEKT3Q9BXF9 490 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 TMEM117Q9H0C3 514 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC113Q9H0I3 377 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CXorf56Q9H5V9 222 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 SLC12A4Q9UP95 1085 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 NRXN2Q9P2S2 1712 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 RBBP6Q7Z6E9 1792 aaKnown RBP13.64□□□□□ -0.23
SHMT1-205ENST00000395684 SPOPO43791 374 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 FMO1Q01740 532 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 ZNF564Q8TBZ8 553 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-205ENST00000395684 SH2D3AQ9BRG2 576 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 TMEM206Q9H813 350 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 AAASQ9NRG9 546 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 HSPBP1Q9NZL4 362 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 PKD2L1Q9P0L9 805 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 MTUS1Q9ULD2 1270 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 CREB1P16220 341 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 IBSPP21815 317 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-205ENST00000395684 PPP1R7Q15435 360 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 LONRF1Q17RB8 773 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 HIBCHQ6NVY1 386 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-205ENST00000395684 CYFIP1Q7L576 1253 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 XXYLT1Q8NBI6 393 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 MORC4Q8TE76 937 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 CSRNP1Q96S65 589 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 SAMD15Q9P1V8 674 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 LARSQ9P2J5 1176 aaKnown RBP13.64□□□□□ -0.23
SHMT1-205ENST00000395684 MCM8Q9UJA3 840 aa13.64□□□□□ -0.23
SHMT1-205ENST00000395684 TULP1O00294 542 aaPredicted RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 CYP1A2P05177 515 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 ITGB5P18084 799 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 ALDH1B1P30837 517 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 RASA3Q14644 834 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 LRRC14Q15048 493 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 MSL1Q68DK7 614 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 MFSD5Q6N075 450 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 NSMFQ6X4W1 530 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 MIGA2Q7L4E1 593 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 TRPM8Q7Z2W7 1104 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 CROCCP2Q86T23 111 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 CCDC50Q8IVM0 306 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 PPM1KQ8N3J5 372 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 MAGEC3Q8TD91 643 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 TMEM174Q8WUU8 243 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 SEMA4DQ92854 862 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 VTI1AQ96AJ9 217 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 CDC42EP4Q9H3Q1 356 aaKnown RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 MYH11P35749 1972 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 PASKQ96RG2 1323 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 ANKRD31Q8N7Z5 1873 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 GOLGA8IPA6NC78 632 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 GOLGA8JA6NMD2 632 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 CLDN3O15551 220 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 DLATP10515 647 aaKnown RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 MXI1P50539 228 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 FAM133BQ5BKY9 247 aaKnown RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 RNF207Q6ZRF8 634 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 OTUD6AQ7L8S5 288 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 C12orf50Q8NA57 414 aaPredicted RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 C1orf54Q8WWF1 131 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 ACCSQ96QU6 501 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 TAOK3Q9H2K8 898 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 RANBP17Q9H2T7 1088 aaKnown RBP13.63□□□□□ -0.23
SHMT1-205ENST00000395684 LRRC19Q9H756 370 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 ABCF3Q9NUQ8 709 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 SERPINA10Q9UK55 444 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 ATRNL1Q5VV63 1379 aa13.63□□□□□ -0.23
SHMT1-205ENST00000395684 FOXO6A8MYZ6 492 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ACSL3O95573 720 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ECEL1O95672 775 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ADRB2P07550 413 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 RWDD2BP57060 319 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 MAP2K1Q02750 393 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 NEDD9Q14511 834 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 E2F5Q15329 346 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 TBC1D10BQ4KMP7 808 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 C12orf56Q8IXR9 622 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 PSPC1Q8WXF1 523 aaKnown RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ELMO3Q96BJ8 720 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ZNF653Q96CK0 615 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 PRMT6Q96LA8 375 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 RUNDC3BQ96NL0 473 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 AGAP1Q9UPQ3 857 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ZHX2Q9Y6X8 837 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ECE2O60344 883 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 SNX3O60493 162 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 GSTA1P08263 222 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 CYP11B1P15538 503 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 CHKAP35790 457 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 TAOK1Q7L7X3 1001 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 MGARPQ8TDB4 240 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms