RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 RNASELQ05823 741 aaKnown RBP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 BNIP1Q12981 228 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 KIF22Q14807 665 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 KYNUQ16719 465 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 CRELD2Q6UXH1 353 aaPredicted RBP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 UBL4BQ8N7F7 174 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 SLC17A8Q8NDX2 589 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 TRIM6Q9C030 488 aaPredicted RBP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 ADAMTSL1Q8N6G6 1762 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 CFAP73A6NFT4 308 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 SLITRK3O94933 977 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 GCLMP48507 274 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 RBM5P52756 815 aaKnown RBP eCLIP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 COPS2P61201 443 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 PPP3CAQ08209 521 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 RRP1BQ14684 758 aaKnown RBP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 PPP2R5EQ16537 467 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 DAB2IPQ5VWQ8 1189 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 SLC13A5Q86YT5 568 aaPredicted RBP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 HERPUD2Q9BSE4 406 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 NSRP1Q9H0G5 558 aaKnown RBP19.82■□□□□ 0.76
CCDC3-201ENST00000378825 EXOC3O60645 756 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 SEL1L2Q5TEA6 688 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 SLFN13Q68D06 897 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 PHLDB2Q86SQ0 1253 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 EMSYQ7Z589 1322 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 PODXLO00592 558 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 ALADP13716 330 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 IKQ13123 557 aaPredicted RBP19.81■□□□□ 0.76
CCDC3-201ENST00000378825 Q4G0T1 1027 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 FAM47EQ6ZV65 393 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 ZNF720Q7Z2F6 126 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 NAP1L4Q99733 375 aaKnown RBP19.81■□□□□ 0.76
CCDC3-201ENST00000378825 FAM167BQ9BTA0 163 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 WDR18Q9BV38 432 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 TMEM109Q9BVC6 243 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 QTRT2Q9H974 415 aaKnown RBP19.81■□□□□ 0.76
CCDC3-201ENST00000378825 PARVGQ9HBI0 331 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 CHST7Q9NS84 486 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.81■□□□□ 0.76
CCDC3-201ENST00000378825 TRPC5Q9UL62 973 aaPredicted RBP19.81■□□□□ 0.76
CCDC3-201ENST00000378825 FRMD4BQ9Y2L6 1034 aa19.81■□□□□ 0.76
CCDC3-201ENST00000378825 KLRG2A4D1S0 409 aaPredicted RBP19.8■□□□□ 0.76
CCDC3-201ENST00000378825 SPOPO43791 374 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 ONECUT3O60422 494 aaPredicted RBP19.8■□□□□ 0.76
CCDC3-201ENST00000378825 ZNF76P36508 570 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 MAP2K1Q02750 393 aaPredicted RBP19.8■□□□□ 0.76
CCDC3-201ENST00000378825 BFSP1Q12934 665 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 ZNF568Q3ZCX4 644 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 TAOK1Q7L7X3 1001 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 SPATA21Q7Z572 469 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 NOP9Q86U38 636 aaKnown RBP19.8■□□□□ 0.76
CCDC3-201ENST00000378825 RHOT2Q8IXI1 618 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 FAM178BQ8IXR5 827 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 CD101Q93033 1021 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 ZNF622Q969S3 477 aaKnown RBP eCLIP19.8■□□□□ 0.76
CCDC3-201ENST00000378825 TEKT1Q969V4 418 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 TRIM7Q9C029 511 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 ADAM22Q9P0K1 906 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 GPC5P78333 572 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 ODR4Q5SWX8 454 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 MFSD5Q6N075 450 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 BTNL9Q6UXG8 535 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 SIAH1Q8IUQ4 282 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 MAB21L3Q8N8X9 362 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 HSD17B14Q9BPX1 270 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 SH2D3AQ9BRG2 576 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 DMAC2Q9NW81 257 aa19.8■□□□□ 0.76
CCDC3-201ENST00000378825 NOP53Q9NZM5 478 aaKnown RBP19.8■□□□□ 0.76
CCDC3-201ENST00000378825 DDTLA6NHG4 134 aaPredicted RBP19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SUN1O94901 812 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 HLA-DOAP06340 250 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 KRT17Q04695 432 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SLMAPQ14BN4 828 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 C11orf63Q6NUN7 778 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 RNF207Q6ZRF8 634 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 MIGA2Q7L4E1 593 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SLC47A2Q86VL8 602 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SPDL1Q96EA4 605 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 HOMER3Q9NSC5 361 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 MYH11P35749 1972 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 BRAFP15056 766 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SREBF1P36956 1147 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 MSH2P43246 934 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 CRKP46108 304 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SLC27A3Q5K4L6 730 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 HS2ST1Q7LGA3 356 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 TRMT1LQ7Z2T5 733 aaKnown RBP19.79■□□□□ 0.76
CCDC3-201ENST00000378825 SPOCK2Q92563 424 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 UTP4Q969X6 686 aaKnown RBP19.79■□□□□ 0.76
CCDC3-201ENST00000378825 TGS1Q96RS0 853 aaKnown RBP19.79■□□□□ 0.76
CCDC3-201ENST00000378825 ASIC3Q9UHC3 531 aa19.79■□□□□ 0.76
CCDC3-201ENST00000378825 MIF4GDA9UHW6 222 aaKnown RBP19.78■□□□□ 0.76
CCDC3-201ENST00000378825 CYP26A1O43174 497 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 PEX19P40855 299 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 PLEKHO2Q8TD55 490 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 FAM84AQ96KN4 292 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 NUP85Q9BW27 656 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 ARHGEF3Q9NR81 526 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 SLC5A4Q9NY91 659 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms