RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 DPF3Q92784 378 aa15.52■□□□□ 0.08
HMGA1-203ENST00000374116 CEP170P1Q96L14 293 aa15.52■□□□□ 0.08
HMGA1-203ENST00000374116 PPP1R16BQ96T49 567 aa15.52■□□□□ 0.08
HMGA1-203ENST00000374116 PRDM5Q9NQX1 630 aaPredicted RBP15.52■□□□□ 0.08
HMGA1-203ENST00000374116 NRBP2Q9NSY0 501 aa15.52■□□□□ 0.08
HMGA1-203ENST00000374116 PLAGL2Q9UPG8 496 aa15.52■□□□□ 0.08
HMGA1-203ENST00000374116 KRT86O43790 486 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 KRT18P05783 430 aaKnown RBP15.52■□□□□ 0.07
HMGA1-203ENST00000374116 TUBBP07437 444 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 SYN1P17600 705 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 KLRC1P26715 233 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 FAAP100Q0VG06 881 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 SNX17Q15036 470 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 BEND6Q5SZJ8 279 aaPredicted RBP15.52■□□□□ 0.07
HMGA1-203ENST00000374116 PPP4R3CPQ6ZMV5 832 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 EPM2AIP1Q7L775 607 aaPredicted RBP15.52■□□□□ 0.07
HMGA1-203ENST00000374116 CCDC91Q7Z6B0 441 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 KIAA1328Q86T90 577 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 RPAINQ86UA6 219 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 C7orf61Q8IZ16 206 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 FAM71BQ8TC56 605 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 ZNF668Q96K58 619 aaPredicted RBP15.52■□□□□ 0.07
HMGA1-203ENST00000374116 REEP2Q9BRK0 252 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 FAM49AQ9H0Q0 323 aaPredicted RBP15.52■□□□□ 0.07
HMGA1-203ENST00000374116 BHMT2Q9H2M3 363 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 SUGCTQ9HAC7 445 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 GUCA1BQ9UMX6 200 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 NOD1Q9Y239 953 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 NRCAMQ92823 1304 aa15.52■□□□□ 0.07
HMGA1-203ENST00000374116 MARSP56192 900 aaKnown RBP15.51■□□□□ 0.07
HMGA1-203ENST00000374116 ADAM17P78536 824 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 CACNB1Q02641 598 aaPredicted RBP15.51■□□□□ 0.07
HMGA1-203ENST00000374116 TMEM62Q0P6H9 643 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 DRP2Q13474 957 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 CCDC122Q5T0U0 273 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 METTL13Q8N6R0 699 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 NEK9Q8TD19 979 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 CYP26B1Q9NR63 512 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 UMODL1Q5DID0 1318 aa15.51■□□□□ 0.07
HMGA1-203ENST00000374116 ERLIN1O75477 346 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 CD4P01730 458 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 HOXC8P31273 242 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 RARRES1P49788 294 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 CLCN3P51790 818 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 TARBP2Q15633 366 aaKnown RBP15.5■□□□□ 0.07
HMGA1-203ENST00000374116 BMT2Q1RMZ1 405 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 EDRF1Q3B7T1 1238 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 CCDC40Q4G0X9 1142 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 MTHFD1LQ6UB35 978 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 ANKRD33Q7Z3H0 272 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 DHX38Q92620 1227 aaKnown RBP15.5■□□□□ 0.07
HMGA1-203ENST00000374116 JAKMIP2Q96AA8 810 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 FAM167AQ96KS9 214 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 CCDC42Q96M95 316 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 RUSC1Q9BVN2 902 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 NIFKQ9BYG3 293 aaKnown RBP15.5■□□□□ 0.07
HMGA1-203ENST00000374116 PPP1R12CQ9BZL4 782 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 TSGA10Q9BZW7 698 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 MMRN2Q9H8L6 949 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 ARID2Q68CP9 1835 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 DCDC2CA8MYV0 355 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 USO1O60763 962 aaKnown RBP15.5■□□□□ 0.07
HMGA1-203ENST00000374116 C22orf31O95567 290 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 ITGB8P26012 769 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 HOXD13P35453 343 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 SPA17Q15506 151 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 RINT1Q6NUQ1 792 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 C1orf186Q6ZWK4 172 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 SESTD1Q86VW0 696 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 DNAJB3Q8WWF6 145 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 ZBTB9Q96C00 473 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 CCDC43Q96MW1 224 aaKnown RBP15.5■□□□□ 0.07
HMGA1-203ENST00000374116 NACC1Q96RE7 527 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 MED4Q9NPJ6 270 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 FAM207AQ9NSI2 230 aaPredicted RBP15.5■□□□□ 0.07
HMGA1-203ENST00000374116 TBC1D7Q9P0N9 293 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 MYO6Q9UM54 1294 aa15.5■□□□□ 0.07
HMGA1-203ENST00000374116 A0A087WUV0 522 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-203ENST00000374116 TRIM43BA6NCK2 446 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 EVI5O60447 810 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 LYPLA2O95372 231 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 CASP5P51878 434 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 AMPD2Q01433 879 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 ZNF484Q5JVG2 852 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 C1orf53Q5VUE5 145 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 EFCAB12Q6NXP0 572 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 OTUD6AQ7L8S5 288 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 TMEM143Q96AN5 459 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 TRIM43Q96BQ3 446 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-203ENST00000374116 GBP3Q9H0R5 595 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 NUCKS1Q9H1E3 243 aaKnown RBP15.49■□□□□ 0.07
HMGA1-203ENST00000374116 VPS18Q9P253 973 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 TRIM10Q9UDY6 481 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 ZMYND8Q9ULU4 1186 aaPredicted RBP15.49■□□□□ 0.07
HMGA1-203ENST00000374116 L1RE1Q9UN81 338 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 TRAF3IP3Q9Y228 551 aa15.49■□□□□ 0.07
HMGA1-203ENST00000374116 MROH7Q68CQ1 1323 aa15.48■□□□□ 0.07
HMGA1-203ENST00000374116 MBLAC1A4D2B0 266 aaPredicted RBP15.48■□□□□ 0.07
HMGA1-203ENST00000374116 DKC1O60832 514 aaKnown RBP eCLIP15.48■□□□□ 0.07
HMGA1-203ENST00000374116 LCA5LO95447 670 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms