RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MKRN4PQ13434 485 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 LRRC34Q8IZ02 419 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 RAPGEF5Q92565 580 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 KIFC3Q9BVG8 833 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 EMSYQ7Z589 1322 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 CLDN3O15551 220 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 TAC1P20366 129 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 RFX1P22670 979 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 STAT3P40763 770 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 NAB2Q15742 525 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 HLFQ16534 295 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 FAM182BQ5T319 152 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 KIRREL3Q8IZU9 778 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 TEKT4Q8WW24 435 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 THTPAQ9BU02 230 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 SLC9A2Q9UBY0 812 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 UBTFL6P0CB48 400 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 ZBTB41Q5SVQ8 909 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 SLFN12LQ6IEE8 588 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 ZBTB10Q96DT7 871 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 PHF20Q9BVI0 1012 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 DHX36Q9H2U1 1008 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 SNX25Q9H3E2 840 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 ANP32DO95626 131 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 TRIP10Q15642 601 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 MIS18BP1Q6P0N0 1132 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 GIMAP8Q8ND71 665 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 HIC2Q96JB3 615 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 CYP26B1Q9NR63 512 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 TMEM51Q9NW97 253 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 STX18Q9P2W9 335 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 PALLDQ8WX93 1383 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 PREX1Q8TCU6 1659 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 SLC16A4O15374 487 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 TYK2P29597 1187 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 CTCFP49711 727 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 NIM1KQ8IY84 436 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 AGR3Q8TD06 166 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 GFM2Q969S9 779 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 SCP2P22307 547 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 YWHAHQ04917 246 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 DNAL1Q4LDG9 190 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 ZNF667Q5HYK9 610 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 HABP4Q5JVS0 413 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 BARGINQ6ZT62 677 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 LRRN4CLQ8ND94 238 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 KLHL8Q9P2G9 620 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 PI4KBQ9UBF8 816 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 MARCOQ9UEW3 520 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 IP6K2Q9UHH9 426 aa20.7■□□□□ 0.9
CCDC88B-202ENST00000356786 CLRN2A0PK11 232 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 SCTRP47872 440 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 CDHR1Q96JP9 859 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 FAM213AQ9BRX8 229 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 VCPKMTQ9H867 229 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 SCHIP1Q9P0W5 487 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 SEL1LQ9UBV2 794 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 PPP1R3GB7ZBB8 358 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 KRT7P08729 469 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 AP1B1Q10567 949 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 TSTA3Q13630 321 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 CCDC92Q53HC0 331 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 PDXDC2PQ6P474 469 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 BBS5Q8N3I7 341 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 CEP95Q96GE4 821 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 C1orf167Q5SNV9 1468 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 B2RBV5 119 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 PDXKO00764 312 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 XPOTO43592 962 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 SURF1Q15526 300 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 SMAD1Q15797 465 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 ROPN1BQ9BZX4 212 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 ROPN1Q9HAT0 212 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 BSDC1Q9NW68 430 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 DUSP10Q9Y6W6 482 aa20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 PDS5AQ29RF7 1337 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-202ENST00000356786 OLFML2BQ68BL8 750 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 FOXP2O15409 715 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 APBA3O96018 575 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 ANXA13P27216 316 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 KCNJ1P48048 391 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 USP11P51784 963 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 ANTXR2P58335 489 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 EFTUD2Q15029 972 aaKnown RBP eCLIP20.68■□□□□ 0.96e-8■■■■□ 22.8
CCDC88B-202ENST00000356786 THNSL1Q8IYQ7 743 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 C7orf25Q9BPX7 421 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 ASNSD1Q9NWL6 643 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 CRB1P82279 1406 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 CYP26A1O43174 497 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 CATSPER1Q8NEC5 780 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 CASKIN2Q8WXE0 1202 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 DHX38Q92620 1227 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 USP17L10C9JJH3 530 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 RTN2O75298 545 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 LDHAP00338 332 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 PRELPP51888 382 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 PSMC1P62191 440 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 ANKZF1Q9H8Y5 726 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 KIF9Q9HAQ2 790 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 ZC4H2Q9NQZ6 224 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms