RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 DDX18Q9NVP1 670 aaKnown RBP16.8■□□□□ 0.28
RTN3-205ENST00000356000 GRHL1Q9NZI5 618 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 SAP30BPQ9UHR5 308 aaKnown RBP16.8■□□□□ 0.28
RTN3-205ENST00000356000 SNX24Q9Y343 169 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 ZNF862O60290 1169 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 RARGP13631 454 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 FGFR4P22455 802 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 NFKBIAP25963 317 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 TAF1BQ53T94 588 aaPredicted RBP16.8■□□□□ 0.28
RTN3-205ENST00000356000 NAALADL2Q58DX5 795 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 SGIP1Q9BQI5 828 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 PHF20Q9BVI0 1012 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 FAM32AQ9Y421 112 aaKnown RBP16.8■□□□□ 0.28
RTN3-205ENST00000356000 NR2E1Q9Y466 385 aa16.8■□□□□ 0.28
RTN3-205ENST00000356000 ABCB11O95342 1321 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 CHD4Q14839 1912 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 A8MXQ7 604 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.79■□□□□ 0.28
RTN3-205ENST00000356000 BRAFP15056 766 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 HOXA10P31260 410 aaPredicted RBP16.79■□□□□ 0.28
RTN3-205ENST00000356000 PPP1R2P41236 205 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 POLR2FP61218 127 aaKnown RBP16.79■□□□□ 0.28
RTN3-205ENST00000356000 PPP2R5CQ13362 524 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 C1orf228Q6PIY5 440 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 TMTC3Q6ZXV5 915 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 PRICKLE1Q96MT3 831 aaPredicted RBP16.79■□□□□ 0.28
RTN3-205ENST00000356000 DISC1Q9NRI5 854 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 CEP72Q9P209 647 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 MTRF1LQ9UGC7 380 aaKnown RBP16.79■□□□□ 0.28
RTN3-205ENST00000356000 RASAL2Q9UJF2 1139 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 SPO11Q9Y5K1 396 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 SPDYE16A6NNV3 312 aaPredicted RBP16.79■□□□□ 0.28
RTN3-205ENST00000356000 EXOC3O60645 756 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 RELAQ04206 551 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 NEXNQ0ZGT2 675 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 CDC16Q13042 620 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 KIF22Q14807 665 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 LONRF1Q17RB8 773 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 CTC1Q2NKJ3 1217 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 SLC45A4Q5BKX6 768 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 NEPROQ6NW34 567 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 SLFN11Q7Z7L1 901 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 C10orf82Q8WW14 230 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 RUNDC3BQ96NL0 473 aa16.79■□□□□ 0.28
RTN3-205ENST00000356000 PFASO15067 1338 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 BTBD11A6QL63 1104 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 NBPF26B4DH59 902 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 COL6A2P12110 1019 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 CLCN2P51788 898 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 AIMP1Q12904 312 aaKnown RBP16.78■□□□□ 0.28
RTN3-205ENST00000356000 DHX34Q14147 1143 aaKnown RBP16.78■□□□□ 0.28
RTN3-205ENST00000356000 C10orf76Q5T2E6 689 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 ATG9AQ7Z3C6 839 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 CMTR1Q8N1G2 835 aaKnown RBP16.78■□□□□ 0.28
RTN3-205ENST00000356000 FLAD1Q8NFF5 587 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 STK33Q9BYT3 514 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 TMEM60Q9H2L4 133 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 ZFP69BQ9UJL9 534 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 CBFA2T3O75081 653 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 XBP1P17861 261 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 TRPC1P48995 793 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 FKBP4Q02790 459 aaKnown RBP eCLIP16.78■□□□□ 0.28
RTN3-205ENST00000356000 TBL3Q12788 808 aaKnown RBP16.78■□□□□ 0.28
RTN3-205ENST00000356000 KLHDC10Q6PID8 442 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 RBM44Q6ZP01 1051 aaKnown RBP16.78■□□□□ 0.28
RTN3-205ENST00000356000 PEX26Q7Z412 305 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 PATL1Q86TB9 770 aaKnown RBP16.78■□□□□ 0.28
RTN3-205ENST00000356000 JAMLQ86YT9 394 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 CEP70Q8NHQ1 597 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 TPCN2Q8NHX9 752 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 TNFRSF25Q93038 417 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 CGREF1Q99674 301 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.78■□□□□ 0.28
RTN3-205ENST00000356000 EBF3Q9H4W6 596 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 ZDHHC7Q9NXF8 308 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 ADAMTS1Q9UHI8 967 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 PHTF1Q9UMS5 762 aa16.78■□□□□ 0.28
RTN3-205ENST00000356000 ZWINTO95229 277 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 FGGP02679 453 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 LONP1P36776 959 aaKnown RBP16.77■□□□□ 0.28
RTN3-205ENST00000356000 PTPROQ16827 1216 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 ZNF568Q3ZCX4 644 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 PPP1R21Q6ZMI0 780 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 PASD1Q8IV76 773 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 SCAIQ8N9R8 606 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 KBTBD4Q9NVX7 518 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 NKIRAS1Q9NYS0 192 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 PARP2Q9UGN5 583 aa16.77■□□□□ 0.28
RTN3-205ENST00000356000 MATN2O00339 956 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 LDHAP00338 332 aaKnown RBP16.77■□□□□ 0.27
RTN3-205ENST00000356000 HOXD11P31277 338 aaPredicted RBP16.77■□□□□ 0.27
RTN3-205ENST00000356000 IL9RQ01113 521 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 CCDC153Q494R4 210 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 CROCCP3Q8IVE0 287 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 ZCRB1Q8TBF4 217 aaKnown RBP16.77■□□□□ 0.27
RTN3-205ENST00000356000 GLG1Q92896 1179 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 TELO2Q9Y4R8 837 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 NR2E3Q9Y5X4 410 aa16.77■□□□□ 0.27
RTN3-205ENST00000356000 HEG1Q9ULI3 1381 aa16.76■□□□□ 0.27
RTN3-205ENST00000356000 CCDC162PA2VCL2 907 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms