RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 FBXO18Q8NFZ0 1043 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 NEK9Q8TD19 979 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 NUP88Q99567 741 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-201ENST00000355766 LZTS2Q9BRK4 669 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 LRRC2Q9BYS8 371 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 RAVER2Q9HCJ3 691 aaKnown RBP7.92□□□□□ -1.14
VPS13A-201ENST00000355766 TOMM22Q9NS69 142 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 CFAP45Q9UL16 551 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 MORC2Q9Y6X9 1032 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-201ENST00000355766 ZNFX1Q9P2E3 1918 aaKnown RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 ASB14A6NK59 587 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 RANBP6O60518 1105 aaKnown RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 ZBED4O75132 1171 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 DEXIO95424 95 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 XBP1P17861 261 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 LIG1P18858 919 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 OAZ1P54368 228 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 ERVK-21P61565 698 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 WDR5P61964 334 aaKnown RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 TROAPQ12815 778 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 STK3Q13188 491 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 GRM2Q14416 872 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 RPS26P11Q5JNZ5 115 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 MICU3Q86XE3 530 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF444Q8N0Y2 327 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 PRPF38AQ8NAV1 312 aaKnown RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 FANCBQ8NB91 859 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 GLIS3Q8NEA6 775 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 FLCNQ8NFG4 579 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 SYAP1Q96A49 352 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 WDR89Q96FK6 387 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 TGS1Q96RS0 853 aaKnown RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 FTOQ9C0B1 505 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 CCDC86Q9H6F5 360 aaKnown RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 MKNK2Q9HBH9 465 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 SLC38A10Q9HBR0 1119 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 ORC3Q9UBD5 711 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 PRKAG3Q9UGI9 489 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 MTUS1Q9ULD2 1270 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 Q9Y3F1 56 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 CTDP1Q9Y5B0 961 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 GREB1LQ9C091 1923 aaPredicted RBP7.91□□□□□ -1.14
VPS13A-201ENST00000355766 MYO9BQ13459 2157 aa7.91□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF318Q5VUA4 2279 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 LINC01553A4QN01 128 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 VPS37CA5D8V6 355 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 H3BQ06 376 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 hCG_1984214I3L0E3 225 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TMPRSS2O15393 492 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 JAK2O60674 1132 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 NDUFB10O96000 172 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 IQCF3P0C7M6 154 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TSPY3P0CV98 308 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TSPY8P0CW00 308 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 FDPSP14324 419 aaKnown RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 NCLP19338 710 aaKnown RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 DEFB103AP81534 67 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 PURAQ00577 322 aaKnown RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TRIM29Q14134 588 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 RRP12Q5JTH9 1297 aaKnown RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TAPT1Q6NXT6 567 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 OGFOD3Q6PK18 319 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TMTC3Q6ZXV5 915 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 CHST3Q7LGC8 479 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 TMCO2Q7Z6W1 182 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 ADHFE1Q8IWW8 467 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 FBXO16Q8IX29 292 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF713Q8N859 430 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 CTCFLQ8NI51 663 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 EPS8L3Q8TE67 593 aaKnown RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 C8orf76Q96K31 380 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF396Q96N95 335 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 ACAD9Q9H845 621 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 A1CFQ9NQ94 594 aaKnown RBP7.9□□□□□ -1.14
VPS13A-201ENST00000355766 PDGFCQ9NRA1 345 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 HOMER2Q9NSB8 354 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 FAM50BQ9Y247 325 aa7.9□□□□□ -1.14
VPS13A-201ENST00000355766 CYP2D7A0A087X1C5 515 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 IGKV6D-41A0A0C4DH26 115 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 F5H6K3 240 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 PRPF3O43395 683 aaKnown RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 ZNF862O60290 1169 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 GJB5O95377 273 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 TOP1P11387 765 aaKnown RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 UBE2HP62256 183 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 CCT2P78371 535 aaKnown RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 KLRC3Q07444 240 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 SSRP1Q08945 709 aaKnown RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 RESTQ13127 1097 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 BFSP2Q13515 415 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 GRM4Q14833 912 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 TIGD5Q53EQ6 642 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 HERC4Q5GLZ8 1057 aaPredicted RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 FAM47CQ5HY64 1035 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 TMEM63BQ5T3F8 832 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 IQSEC1Q6DN90 963 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 GALNT17Q6IS24 598 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 RCSD1Q6JBY9 416 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 RETREG2Q8NC44 543 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 RAD9AQ99638 391 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms