RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TEPSINQ96N21 525 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 LRRC37BQ96QE4 947 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 CDC5LQ99459 802 aaKnown RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 DPYSL5Q9BPU6 564 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 KRTAP4-12Q9BQ66 201 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 TCF25Q9BQ70 676 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 ENKD1Q9H0I2 346 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 SLC12A5Q9H2X9 1139 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 NCDNQ9UBB6 729 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 NOB1Q9ULX3 412 aaKnown RBP4.36□□□□□ -1.71
HMGB1-201ENST00000326004 ZNF536O15090 1300 aa4.36□□□□□ -1.71
HMGB1-201ENST00000326004 NPEPPSL1A6NEC2 478 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 KIF3BO15066 747 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 PRPF3O43395 683 aaKnown RBP4.35□□□□□ -1.71
HMGB1-201ENST00000326004 ATF3P18847 181 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 SREBF1P36956 1147 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 GZMKP49863 264 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 CDC42EP1Q00587 391 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 DUSP8Q13202 625 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 SP140Q13342 867 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 SAFB2Q14151 953 aaKnown RBP eCLIP4.35□□□□□ -1.71
HMGB1-201ENST00000326004 ACAP1Q15027 740 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 GFOD2Q3B7J2 385 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 C3orf36Q3SXR2 165 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 TBC1D10BQ4KMP7 808 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-201ENST00000326004 THEMIS2Q5TEJ8 643 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 EPM2AIP1Q7L775 607 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-201ENST00000326004 CATIPQ7Z7H3 387 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 TTC7BQ86TV6 843 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 RHOT1Q8IXI2 618 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 GPR135Q8IZ08 494 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 CASKIN2Q8WXE0 1202 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 C1GALT1C1Q96EU7 318 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 MVB12AQ96EY5 273 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 IL17RAQ96F46 866 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 MAP3K14Q99558 947 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 GTPBP4Q9BZE4 634 aaKnown RBP4.35□□□□□ -1.71
HMGB1-201ENST00000326004 TMEM140Q9NV12 185 aa4.35□□□□□ -1.71
HMGB1-201ENST00000326004 UBE2QL1A1L167 161 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 SLC16A6O15403 523 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 TEX33O43247 280 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 AP1G1O43747 822 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 IL2RBP14784 551 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 CASRP41180 1078 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 SLC6A9P48067 706 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 FLT3LGP49771 235 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 APBA1Q02410 837 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 MRPL49Q13405 166 aaKnown RBP4.34□□□□□ -1.71
HMGB1-201ENST00000326004 RAB39AQ14964 217 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 PGS1Q32NB8 556 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 MFSD5Q6N075 450 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 FAM111BQ6SJ93 734 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 GLB1LQ6UWU2 654 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 B3GNT9Q6UX72 402 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 ZNF572Q7Z3I7 529 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-201ENST00000326004 TAX1BP1Q86VP1 789 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 DRC7Q8IY82 874 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 TRMT2AQ8IZ69 625 aaKnown RBP4.34□□□□□ -1.71
HMGB1-201ENST00000326004 GIMAP8Q8ND71 665 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-201ENST00000326004 TTC8Q8TAM2 541 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 SLC35G2Q8TBE7 412 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 ARL8AQ96BM9 186 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 BORCS6Q96GS4 357 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 LRGUKQ96M69 825 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 MPHOSPH9Q99550 1183 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 PDCD2LQ9BRP1 358 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 PLA2G12BQ9BX93 195 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 SENP6Q9GZR1 1112 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-201ENST00000326004 AGO3Q9H9G7 860 aaKnown RBP4.34□□□□□ -1.71
HMGB1-201ENST00000326004 KMT5AQ9NQR1 393 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 PRDM11Q9NQV5 511 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 ANLNQ9NQW6 1124 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 TDP1Q9NUW8 608 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 MOCS1Q9NZB8 636 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 PPP4R1LQ9P1A2 415 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 SIK3Q9Y2K2 1263 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 SLC30A1Q9Y6M5 507 aa4.34□□□□□ -1.71
HMGB1-201ENST00000326004 GPR32O75388 356 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 RAD17O75943 681 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 INHBBP09529 407 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 GUCY1A2P33402 732 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 PTPN7P35236 360 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 IL12RB1P42701 662 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 PTH1RQ03431 593 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 IL10RAQ13651 578 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 HLTFQ14527 1009 aaKnown RBP eCLIP4.33□□□□□ -1.72
HMGB1-201ENST00000326004 GRM7Q14831 915 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 ATP2B3Q16720 1220 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 FAM47AQ5JRC9 791 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 PRAMEF14Q5SWL7 426 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 C14orf80Q86SX3 495 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 RSPH3Q86UC2 560 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 CIR1Q86X95 450 aaPredicted RBP4.33□□□□□ -1.72
HMGB1-201ENST00000326004 MDM1Q8TC05 714 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 NSUN6Q8TEA1 469 aaKnown RBP4.33□□□□□ -1.72
HMGB1-201ENST00000326004 DIS3LQ8TF46 1054 aaKnown RBP4.33□□□□□ -1.72
HMGB1-201ENST00000326004 RUNDC1Q96C34 613 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 TAAR9Q96RI9 348 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 PTPN18Q99952 460 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms