RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 VPS39Q96JC1 886 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 C17orf80Q9BSJ5 609 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 ABHD10Q9NUJ1 306 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SENP1Q9P0U3 644 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 ATF5Q9Y2D1 282 aaPredicted RBP8.35□□□□□ -1.07
CIITA-201ENST00000324288 NMT2O60551 498 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 ARIH2O95376 493 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 DAB2IPQ5VWQ8 1189 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SARM1Q6SZW1 724 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 TTC8Q8TAM2 541 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 AGBL1Q96MI9 1066 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 IRX2Q9BZI1 471 aaPredicted RBP8.35□□□□□ -1.07
CIITA-201ENST00000324288 UNC45AQ9H3U1 944 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 PRCPP42785 496 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 TEDDM1Q5T9Z0 273 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SIX5Q8N196 739 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 BBS2Q9BXC9 721 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 TRAPPC8Q9Y2L5 1435 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 UBA6A0AVT1 1052 aaPredicted RBP8.35□□□□□ -1.07
CIITA-201ENST00000324288 FAM196BA6NMK8 535 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 STAT3P40763 770 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 COBLL1Q53SF7 1204 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 BHMT2Q9H2M3 363 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 TRIM10Q9UDY6 481 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 B2RBV5 119 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SH2B2O14492 632 aaPredicted RBP8.35□□□□□ -1.07
CIITA-201ENST00000324288 MTM1Q13496 603 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SKIV2LQ15477 1246 aaKnown RBP8.35□□□□□ -1.07
CIITA-201ENST00000324288 MAPK11Q15759 364 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 MDM1Q8TC05 714 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 BRIP1Q9BX63 1249 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 MAP3K15Q6ZN16 1313 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 NBPF26B4DH59 902 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 ZNF263O14978 683 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 PLEKHM3Q6ZWE6 761 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SPATA21Q7Z572 469 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 NBPF15Q8N660 670 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SLC17A8Q8NDX2 589 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 ACAP3Q96P50 834 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 C11orf70Q9BRQ4 267 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 SPON2Q9BUD6 331 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 TRIM8Q9BZR9 551 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 PUS7LQ9H0K6 701 aaKnown RBP8.35□□□□□ -1.07
CIITA-201ENST00000324288 NUP160Q12769 1436 aa8.35□□□□□ -1.07
CIITA-201ENST00000324288 CCNE1P24864 410 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 CENPAP49450 140 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 PAPOLAP51003 745 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 AARS2Q5JTZ9 985 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 CLMNQ96JQ2 1002 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 TMEM206Q9H813 350 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 ATP6V0A4Q9HBG4 840 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 TMCC1O94876 653 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 FTLP02792 175 aaPredicted RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 TARSP26639 723 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 STXBP2Q15833 593 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 TRPM8Q7Z2W7 1104 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 ZNF786Q8N393 782 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 SH3RF3Q8TEJ3 882 aaPredicted RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 HIC2Q96JB3 615 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 CNDP1Q96KN2 507 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 RERGLQ9H628 205 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 USE1Q9NZ43 259 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 ADD3Q9UEY8 706 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 EIF3HO15372 352 aaKnown RBP eCLIP8.34□□□□□ -1.07
CIITA-201ENST00000324288 KRT37O76014 449 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 PSMC5P62195 406 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 PLIN5Q00G26 463 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 LAYNQ6UX15 382 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 IL17REQ8NFR9 667 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 FAM213AQ9BRX8 229 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 NDEL1Q9GZM8 345 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 NDST4Q9H3R1 872 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 AMACRQ9UHK6 382 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 LRRC53A6NM62 1247 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 LAD1O00515 517 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 SLC16A4O15374 487 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 NR3C1P04150 777 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 LUZP2Q86TE4 346 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 DIS3LQ8TF46 1054 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 FAM162AQ96A26 154 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 CAAP1Q9H8G2 361 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 GEMIN8Q9NWZ8 242 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 WDR17Q8IZU2 1322 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 CAND2O75155 1236 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 FAM83BQ5T0W9 1011 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 PRPF39Q86UA1 669 aaKnown RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 ZBED8Q8IZ13 594 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 WDR11Q9BZH6 1224 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 KCNF1Q9H3M0 494 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 MYOM2P54296 1465 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 DPYSL4O14531 572 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 LSP1P33241 339 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 RESP18Q5W5W9 173 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 CASP10Q92851 521 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 SIK2Q9H0K1 926 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 NUP214P35658 2090 aaPredicted RBP8.34□□□□□ -1.07
CIITA-201ENST00000324288 MMP1P03956 469 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 BAG6P46379 1132 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 ARMCX2Q7L311 632 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms