RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.5■□□□□ 0.87
RTN4-201ENST00000317610 SGPL1O95470 568 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 ECEL1O95672 775 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 MAPTP10636 758 aaKnown RBP20.5■□□□□ 0.87
RTN4-201ENST00000317610 IFNAR2P48551 515 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 ZNF268Q14587 947 aaPredicted RBP20.5■□□□□ 0.87
RTN4-201ENST00000317610 E2F5Q15329 346 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 FAM182BQ5T319 152 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 RHBDF2Q6PJF5 856 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 NOP9Q86U38 636 aaKnown RBP20.5■□□□□ 0.87
RTN4-201ENST00000317610 CDC42EP4Q9H3Q1 356 aaKnown RBP20.5■□□□□ 0.87
RTN4-201ENST00000317610 VEZTQ9HBM0 779 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 AGAP1Q9UPQ3 857 aa20.5■□□□□ 0.87
RTN4-201ENST00000317610 USP15Q9Y4E8 981 aaPredicted RBP20.5■□□□□ 0.87
RTN4-201ENST00000317610 POLRMTO00411 1230 aaKnown RBP20.49■□□□□ 0.87
RTN4-201ENST00000317610 GDF11O95390 407 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 MCCD1P59942 119 aaPredicted RBP20.49■□□□□ 0.87
RTN4-201ENST00000317610 TRAF1Q13077 416 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 ALCAMQ13740 583 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 ZNF564Q8TBZ8 553 aaPredicted RBP20.49■□□□□ 0.87
RTN4-201ENST00000317610 TMEM206Q9H813 350 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 SYNPO2Q9UMS6 1093 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 PTPN22Q9Y2R2 807 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 ANKRD31Q8N7Z5 1873 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 MAPK13O15264 365 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 KIF1CO43896 1103 aaKnown RBP20.49■□□□□ 0.87
RTN4-201ENST00000317610 RWDD2BP57060 319 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 CALCOCO2Q13137 446 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 RNF207Q6ZRF8 634 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 CCHCR1Q8TD31 782 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 PSPC1Q8WXF1 523 aaKnown RBP20.49■□□□□ 0.87
RTN4-201ENST00000317610 BAIAP2L1Q9UHR4 511 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 GTF3C4Q9UKN8 822 aa20.49■□□□□ 0.87
RTN4-201ENST00000317610 ARHGEF35A5YM69 484 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 K7ENM7 598 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 FSCN2O14926 492 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 ALADP13716 330 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 KCNJ1P48048 391 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 GCLMP48507 274 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 NCALDP61601 193 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 RRP1BQ14684 758 aaKnown RBP20.48■□□□□ 0.87
RTN4-201ENST00000317610 CCDC38Q502W7 563 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 CEP55Q53EZ4 464 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 FAM133BQ5BKY9 247 aaKnown RBP20.48■□□□□ 0.87
RTN4-201ENST00000317610 VSTM1Q6UX27 236 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 CPNE8Q86YQ8 564 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 LXNQ9BS40 222 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 NUP85Q9BW27 656 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 EBF2Q9HAK2 575 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 UVRAGQ9P2Y5 699 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 CHORDC1Q9UHD1 332 aaPredicted RBP20.48■□□□□ 0.87
RTN4-201ENST00000317610 PCDHAC2Q9Y5I4 1007 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 ATMINO43313 823 aaPredicted RBP20.48■□□□□ 0.87
RTN4-201ENST00000317610 SPOPO43791 374 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 UBOX5O94941 541 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 JAG1P78504 1218 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 FMO1Q01740 532 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 ARHGEF2Q92974 986 aaKnown RBP20.48■□□□□ 0.87
RTN4-201ENST00000317610 KAT5Q92993 513 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 DDX23Q9BUQ8 820 aaKnown RBP20.48■□□□□ 0.87
RTN4-201ENST00000317610 CCDC113Q9H0I3 377 aa20.48■□□□□ 0.87
RTN4-201ENST00000317610 ZNFX1Q9P2E3 1918 aaKnown RBP20.47■□□□□ 0.87
RTN4-201ENST00000317610 POLR2MP0CAP2 368 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 ATP5DP30049 168 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 LONRF1Q17RB8 773 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 TBC1D1Q86TI0 1168 aaPredicted RBP20.47■□□□□ 0.87
RTN4-201ENST00000317610 GBP7Q8N8V2 638 aaPredicted RBP20.47■□□□□ 0.87
RTN4-201ENST00000317610 PLEKHO2Q8TD55 490 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 TCP11Q8WWU5 503 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 PCIF1Q9H4Z3 704 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 SLX4Q8IY92 1834 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 TMEM120BA0PK00 339 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 CFBP00751 764 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 VIL1P09327 827 aaKnown RBP20.47■□□□□ 0.87
RTN4-201ENST00000317610 NQO1P15559 274 aaKnown RBP20.47■□□□□ 0.87
RTN4-201ENST00000317610 RASA3Q14644 834 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 KREMEN1Q96MU8 473 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 ACCSQ96QU6 501 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 ZNF577Q9BSK1 485 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 TEKT3Q9BXF9 490 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 BCS1LQ9Y276 419 aa20.47■□□□□ 0.87
RTN4-201ENST00000317610 A0A1W2PRG0 241 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 O00370 1275 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 TCEA3O75764 348 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 SUN1O94901 812 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 ITIH2P19823 946 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 SF3A3Q12874 501 aaKnown RBP eCLIP20.46■□□□□ 0.87
RTN4-201ENST00000317610 CCDC25Q86WR0 208 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 SHC3Q92529 594 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 BTBD6Q96KE9 485 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 CBWD1Q9BRT8 395 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 TMEM117Q9H0C3 514 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 FGFR1OP2Q9NVK5 253 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 ZNF536O15090 1300 aa20.46■□□□□ 0.87
RTN4-201ENST00000317610 TCP11X1B4DZS4 312 aa20.45■□□□□ 0.87
RTN4-201ENST00000317610 TISP43B9A030 160 aa20.45■□□□□ 0.87
RTN4-201ENST00000317610 GJB6O95452 261 aa20.45■□□□□ 0.87
RTN4-201ENST00000317610 CLTAP09496 248 aa20.45■□□□□ 0.87
RTN4-201ENST00000317610 ARP10275 920 aa20.45■□□□□ 0.87
RTN4-201ENST00000317610 MXI1P50539 228 aa20.45■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms