RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 FAM193BQ96PV7 902 aaPredicted RBP25.28■■□□□ 1.64
LSM4-201ENST00000252816 TMEM134Q9H6X4 195 aa25.28■■□□□ 1.64
LSM4-201ENST00000252816 NGRNQ9NPE2 291 aaKnown RBP25.28■■□□□ 1.64
LSM4-201ENST00000252816 PARP2Q9UGN5 583 aa25.28■■□□□ 1.64
LSM4-201ENST00000252816 SLC16A4O15374 487 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 GLP2RO95838 553 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 PLS3P13797 630 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 DSC1Q08554 894 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 MCM6Q14566 821 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 DUSP6Q16828 381 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 ATF7IP2Q5U623 682 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 GPBP1Q86WP2 473 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 COLGALT2Q8IYK4 626 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 SPRYD3Q8NCJ5 442 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 RASSF8Q8NHQ8 419 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 RAD54LQ92698 747 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 TMEM175Q9BSA9 504 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 NTPCRQ9BSD7 190 aaKnown RBP25.27■■□□□ 1.64
LSM4-201ENST00000252816 VN1R3Q9BXE9 311 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 SNTG2Q9NY99 539 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 MORC2Q9Y6X9 1032 aaPredicted RBP25.27■■□□□ 1.64
LSM4-201ENST00000252816 PHLPP2Q6ZVD8 1323 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 NCOR1O75376 2440 aa25.27■■□□□ 1.64
LSM4-201ENST00000252816 CARNS1A5YM72 827 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 ALDH2P05091 517 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 NASPP49321 788 aaPredicted RBP25.26■■□□□ 1.63
LSM4-201ENST00000252816 RBM10P98175 930 aaKnown RBP25.26■■□□□ 1.63
LSM4-201ENST00000252816 PTCRAQ6ISU1 281 aaPredicted RBP25.26■■□□□ 1.63
LSM4-201ENST00000252816 DDX53Q86TM3 631 aaKnown RBP25.26■■□□□ 1.63
LSM4-201ENST00000252816 VPS52Q8N1B4 723 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 VN1R2Q8NFZ6 395 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 SPIRE2Q8WWL2 714 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 ADPGKQ9BRR6 497 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 FAN1Q9Y2M0 1017 aa25.26■■□□□ 1.63
LSM4-201ENST00000252816 RBM19Q9Y4C8 960 aaKnown RBP25.26■■□□□ 1.63
LSM4-201ENST00000252816 GRXCR2A6NFK2 248 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 NRP1O14786 923 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 RECQL4O94761 1208 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 IL9P15248 144 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 CLUL1Q15846 466 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 MRPL43Q8N983 215 aaKnown RBP25.25■■□□□ 1.63
LSM4-201ENST00000252816 TMEM161BQ8NDZ6 487 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 ACO2Q99798 780 aaKnown RBP25.25■■□□□ 1.63
LSM4-201ENST00000252816 REEP2Q9BRK0 252 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 TARS2Q9BW92 718 aaKnown RBP25.25■■□□□ 1.63
LSM4-201ENST00000252816 ZBP1Q9H171 429 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 CXCL16Q9H2A7 254 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 MARCH5Q9NX47 278 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 CLEC1BQ9P126 229 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 PRG3Q9Y2Y8 225 aaPredicted RBP25.25■■□□□ 1.63
LSM4-201ENST00000252816 ZMYM2Q9UBW7 1377 aa25.25■■□□□ 1.63
LSM4-201ENST00000252816 BDP1A6H8Y1 2624 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 C2orf71A6NGG8 1288 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 NDUFV1P49821 464 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 PKP1Q13835 747 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 SMC1AQ14683 1233 aaKnown RBP25.24■■□□□ 1.63
LSM4-201ENST00000252816 DCAF4L1Q3SXM0 396 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 MSLNLQ96KJ4 702 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 CDCA3Q99618 268 aaPredicted RBP25.24■■□□□ 1.63
LSM4-201ENST00000252816 MRPL4Q9BYD3 311 aaKnown RBP25.24■■□□□ 1.63
LSM4-201ENST00000252816 PTPRHQ9HD43 1115 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 TFIP11Q9UBB9 837 aaKnown RBP25.24■■□□□ 1.63
LSM4-201ENST00000252816 TNFSF13BQ9Y275 285 aa25.24■■□□□ 1.63
LSM4-201ENST00000252816 F8W810 466 aa25.23■■□□□ 1.63
LSM4-201ENST00000252816 ZSCAN22P10073 491 aaPredicted RBP25.23■■□□□ 1.63
LSM4-201ENST00000252816 MAPTP10636 758 aaKnown RBP25.23■■□□□ 1.63
LSM4-201ENST00000252816 DDIT3P35638 169 aa25.23■■□□□ 1.63
LSM4-201ENST00000252816 KRI1Q8N9T8 703 aaKnown RBP25.23■■□□□ 1.63
LSM4-201ENST00000252816 LINC00301Q8NCQ3 95 aa25.23■■□□□ 1.63
LSM4-201ENST00000252816 AUTS2Q8WXX7 1259 aa25.23■■□□□ 1.63
LSM4-201ENST00000252816 LARP4BQ92615 738 aaKnown RBP25.23■■□□□ 1.63
LSM4-201ENST00000252816 ODF2LQ9ULJ1 636 aa25.23■■□□□ 1.63
LSM4-201ENST00000252816 BARX2Q9UMQ3 279 aaPredicted RBP25.23■■□□□ 1.63
LSM4-201ENST00000252816 GDAQ9Y2T3 454 aa25.23■■□□□ 1.63
LSM4-201ENST00000252816 PTGESO14684 152 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 CXCL14O95715 111 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 CTSAP10619 480 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 OR1G1P47890 313 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 SMTNP53814 917 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 GRIK3Q13003 919 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 KCNC3Q14003 757 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 GIT2Q14161 759 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 STK38Q15208 465 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 PUS10Q3MIT2 529 aaKnown RBP25.22■■□□□ 1.63
LSM4-201ENST00000252816 RPS6KC1Q96S38 1066 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 CDT1Q9H211 546 aa25.22■■□□□ 1.63
LSM4-201ENST00000252816 TNFRSF10AO00220 468 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 ABLIM1O14639 778 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 F13A1P00488 732 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 ZNF131P52739 623 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 CEP120Q8N960 986 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 ZNF396Q96N95 335 aaPredicted RBP25.21■■□□□ 1.63
LSM4-201ENST00000252816 LARSQ9P2J5 1176 aaKnown RBP25.21■■□□□ 1.63
LSM4-201ENST00000252816 CACNG4Q9UBN1 327 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 CCDC39Q9UFE4 941 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 KCNG1Q9UIX4 513 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 CD207Q9UJ71 328 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 MYH11P35749 1972 aa25.21■■□□□ 1.63
LSM4-201ENST00000252816 TDRD15B5MCY1 1934 aaKnown RBP25.21■■□□□ 1.63
LSM4-201ENST00000252816 C5orf42Q9H799 3197 aa25.2■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms