RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 F8VZ95 297 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 BAIAP3O94812 1187 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 JAK1P23458 1154 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 NR2F2P24468 414 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SMARCA1P28370 1054 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 C21orf59P57076 290 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TMPRSS6Q8IU80 811 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 EML4Q9HC35 981 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PIK3R2O00459 728 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CNOT3O75175 753 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PDE9AO76083 593 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ARL1P40616 181 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 COPAP53621 1224 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MYL7Q01449 175 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PARP10Q53GL7 1025 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PRMT9Q6P2P2 845 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC74BQ6ZQY2 392 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 IKBIPQ70UQ0 350 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PLD3Q8IV08 490 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CCNJLQ8IV13 435 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 FAM178BQ8IXR5 827 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 RTCBQ9Y3I0 505 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TRPM1Q7Z4N2 1603 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SLCO1B7G3V0H7 640 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MGRN1O60291 552 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ATP9AO75110 1047 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 STX5Q13190 355 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 KLHL12Q53G59 568 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MIS18BP1Q6P0N0 1132 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TTC33Q6PID6 262 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 NME9Q86XW9 330 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 LRMDAQ9H2I8 198 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MYRFQ9Y2G1 1151 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 UGGT1Q9NYU2 1555 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PNMA6EA0A0J9YXQ4 647 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SMCO2A6NFE2 343 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 KATNA1O75449 491 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 S100A9P06702 114 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 DDX5P17844 614 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TNNI2P48788 182 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CAPRIN1Q14444 709 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ARID5BQ14865 1188 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 EFTUD2Q15029 972 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF804AQ7Z570 1209 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC59Q96AG4 307 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ZBTB9Q96C00 473 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 BTBD9Q96Q07 612 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC1Q9BTT6 524 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ERVK-7P63135 1459 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 BTBD18B2RXH4 712 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 DNAJC6O75061 913 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SLC7A5Q01650 507 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 OCRLQ01968 901 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PPP6R3Q5H9R7 873 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 NFRKBQ6P4R8 1299 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM237Q96Q45 408 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 STARD13Q9Y3M8 1113 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 IDH3BO43837 385 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 LPXNO60711 386 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 EFCAB14O75071 495 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 IDO1P14902 403 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 GPC5P78333 572 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ARMCX4Q5H9R4 360 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CYP4F22Q6NT55 531 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 FRMD5Q7Z6J6 570 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 DDX42Q86XP3 938 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 NELFCDQ8IXH7 590 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ENGASEQ8NFI3 743 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MCRS1Q96EZ8 462 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 GPAMQ9HCL2 828 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ENOPH1Q9UHY7 261 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PLAGL2Q9UPG8 496 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 A2ML1A8K2U0 1454 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MROH7Q68CQ1 1323 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 YTHDC2Q9H6S0 1430 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 B4E1Z4 1266 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MED7O43513 233 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CHN2P52757 468 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 STK4Q13043 487 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SLC15A2Q16348 729 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC36Q1X8D7 754 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 NET1Q7Z628 596 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 KRT73Q86Y46 540 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SMCR8Q8TEV9 937 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ANKS1AQ92625 1134 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 KIAA1586Q9HCI6 787 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PLK2Q9NYY3 685 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SCAF8Q9UPN6 1271 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 UNC5CO95185 931 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TSHRP16473 764 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ABCB4P21439 1286 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CDH3P22223 829 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 EIF2B2P49770 351 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PRKAA2P54646 552 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PTGDRQ13258 359 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 FAM83BQ5T0W9 1011 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 PEX5LQ8IYB4 626 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 EXOC8Q8IYI6 725 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 NOA1Q8NC60 698 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms