RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 LRRC15Q8TF66 581 aa20■□□□□ 0.79
CLN3-243ENST00000635973 LRFN3Q9BTN0 628 aa20■□□□□ 0.79
CLN3-243ENST00000635973 TLE6Q9H808 572 aa20■□□□□ 0.79
CLN3-243ENST00000635973 POLD4Q9HCU8 107 aa20■□□□□ 0.79
CLN3-243ENST00000635973 CD320Q9NPF0 282 aa20■□□□□ 0.79
CLN3-243ENST00000635973 TLR9Q9NR96 1032 aa20■□□□□ 0.79
CLN3-243ENST00000635973 PRKAG3Q9UGI9 489 aa20■□□□□ 0.79
CLN3-243ENST00000635973 PUF60Q9UHX1 559 aaKnown RBP20■□□□□ 0.79
CLN3-243ENST00000635973 CD207Q9UJ71 328 aa20■□□□□ 0.79
CLN3-243ENST00000635973 TCHHQ07283 1943 aa20■□□□□ 0.79
CLN3-243ENST00000635973 A0A087X0B3 334 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 INO80B-WBP1J3KQ70 363 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 FGF18O76093 207 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 ERLIN2O94905 339 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 IRS1P35568 1242 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 NRIP1P48552 1158 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 DMP1Q13316 513 aaPredicted RBP19.99■□□□□ 0.79
CLN3-243ENST00000635973 ADAM15Q13444 863 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 SV2BQ7L1I2 683 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 ECHDC2Q86YB7 292 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 ZBTB8OSQ8IWT0 167 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 LRRC43Q8N309 656 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 COLGALT1Q8NBJ5 622 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 DEPTORQ8TB45 409 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 DHX58Q96C10 678 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 FAM122AQ96E09 287 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 IFT122Q9HBG6 1241 aa19.99■□□□□ 0.79
CLN3-243ENST00000635973 NPHP3-ACAD11A0A0J9YXS1 232 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 GOLGA6L4A6NEF3 574 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 PI4K2BG5E9Z4 385 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 LINC01565O15544 149 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 TBCAO75347 108 aaKnown RBP19.98■□□□□ 0.79
CLN3-243ENST00000635973 ALADP13716 330 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 NAMPTP43490 491 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 PTENP60484 403 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 CACNB1Q02641 598 aaPredicted RBP19.98■□□□□ 0.79
CLN3-243ENST00000635973 DLX2Q07687 328 aaPredicted RBP19.98■□□□□ 0.79
CLN3-243ENST00000635973 ADALQ6DHV7 355 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 PDE12Q6L8Q7 609 aaKnown RBP19.98■□□□□ 0.79
CLN3-243ENST00000635973 ADGRD2Q7Z7M1 963 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 EFHBQ8N7U6 833 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 IQUBQ8NA54 791 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 BSNDQ8WZ55 320 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 POP1Q99575 1024 aaKnown RBP19.98■□□□□ 0.79
CLN3-243ENST00000635973 PYM1Q9BRP8 204 aaKnown RBP19.98■□□□□ 0.79
CLN3-243ENST00000635973 C2orf40Q9H1Z8 148 aa19.98■□□□□ 0.79
CLN3-243ENST00000635973 FSD2A1L4K1 749 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 CCDC169A6NNP5 214 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 POLR2DO15514 142 aaKnown RBP19.97■□□□□ 0.79
CLN3-243ENST00000635973 MBTPS2O43462 519 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 TBX10O75333 385 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 FAM13AO94988 1023 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 EOMESO95936 686 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 CMA1P23946 247 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 PEX3P56589 373 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 KRT17Q04695 432 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 POU5F1BQ06416 359 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 SMAD4Q13485 552 aaKnown RBP19.97■□□□□ 0.79
CLN3-243ENST00000635973 ADHFE1Q8IWW8 467 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 ZNF558Q96NG5 402 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 REEP2Q9BRK0 252 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 CUEDC2Q9H467 287 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 ZHX3Q9H4I2 956 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 CWH43Q9H720 699 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 CHST12Q9NRB3 414 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 KCNH3Q9ULD8 1083 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 ODF2LQ9ULJ1 636 aa19.97■□□□□ 0.79
CLN3-243ENST00000635973 PIN4Q9Y237 131 aaKnown RBP19.97■□□□□ 0.79
CLN3-243ENST00000635973 A0A0U1RQF3 1178 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 SRGAP2BP0DMP2 458 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 SKIP12755 728 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 LIG1P18858 919 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 PPM1AP35813 382 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 ZP2Q05996 745 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 NCBP1Q09161 790 aaKnown RBP19.96■□□□□ 0.79
CLN3-243ENST00000635973 MAPK7Q13164 816 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 SMAD2Q15796 467 aaKnown RBP19.96■□□□□ 0.79
CLN3-243ENST00000635973 ARSHQ5FYA8 562 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 TWF2Q6IBS0 349 aaKnown RBP19.96■□□□□ 0.79
CLN3-243ENST00000635973 DAW1Q8N136 415 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 FSIP1Q8NA03 581 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 CASD1Q96PB1 797 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 KIFC3Q9BVG8 833 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 NFKBIZQ9BYH8 718 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 MINDY3Q9H8M7 445 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 C11orf16Q9NQ32 467 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 HCSTQ9UBK5 93 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 HCN4Q9Y3Q4 1203 aa19.96■□□□□ 0.79
CLN3-243ENST00000635973 A0A1B0GVL5 298 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 FAM86C2PA6NEL3 165 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 SFI1A8K8P3 1242 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 PLS3P13797 630 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 PFKFB1P16118 471 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 MBTD1Q05BQ5 628 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 PCBP1Q15365 356 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-243ENST00000635973 TMEM132AQ24JP5 1023 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 CDCA2Q69YH5 1023 aaPredicted RBP19.95■□□□□ 0.78
CLN3-243ENST00000635973 KCNT2Q6UVM3 1135 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 DYMQ7RTS9 669 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 IFNLR1Q8IU57 520 aaPredicted RBP19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms