RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 MUTP22033 750 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 ARL2P36404 184 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 TXKP42681 527 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 RARRES1P49788 294 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 PTPN5P54829 565 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 PTPN14Q15678 1187 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 LONRF3Q496Y0 759 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 UBXN11Q5T124 520 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 TMEM173Q86WV6 379 aaPredicted RBP13.23□□□□□ -0.29
UPF3B-204ENST00000619445 ZDHHC14Q8IZN3 488 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 TDRD5Q8NAT2 981 aaKnown RBP13.23□□□□□ -0.29
UPF3B-204ENST00000619445 SLC22A17Q8WUG5 538 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 ACSF2Q96CM8 615 aaPredicted RBP13.23□□□□□ -0.29
UPF3B-204ENST00000619445 FBXL18Q96ME1 805 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 MTMR9Q96QG7 549 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 XPNPEP1Q9NQW7 623 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 DNAJB4Q9UDY4 337 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 DBR1Q9UK59 544 aaKnown RBP13.23□□□□□ -0.29
UPF3B-204ENST00000619445 LIMCH1Q9UPQ0 1083 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 IPPQ9Y573 584 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 STK24Q9Y6E0 443 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 FAM205CA6NFA0 338 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 MEIS3P2A8K0S8 358 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 NRP1O14786 923 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 ADH1AP07327 375 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 KLRC2P26717 231 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 HMGN5P82970 282 aaKnown RBP13.22□□□□□ -0.29
UPF3B-204ENST00000619445 NHLH1Q02575 133 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 CREMQ03060 361 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 MBTD1Q05BQ5 628 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 RARS2Q5T160 578 aaKnown RBP13.22□□□□□ -0.29
UPF3B-204ENST00000619445 SLC27A1Q6PCB7 646 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 C15orf39Q6ZRI6 1047 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 ZNF280BQ86YH2 543 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 ZBTB8OSQ8IWT0 167 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 NACC1Q96RE7 527 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 POLR3CQ9BUI4 534 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-204ENST00000619445 COLEC11Q9BWP8 271 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 APOL5Q9BWW9 433 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 RHOBTB2Q9BYZ6 727 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 C2orf40Q9H1Z8 148 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 FOXP1Q9H334 677 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-204ENST00000619445 POMKQ9H5K3 350 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 TSHZ2Q9NRE2 1034 aa13.22□□□□□ -0.29
UPF3B-204ENST00000619445 BMP2KQ9NSY1 1161 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-204ENST00000619445 PRMT7Q9NVM4 692 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-204ENST00000619445 ARL5CA6NH57 179 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 DDHD2O94830 711 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 POMCP01189 267 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 TRAPPC10P48553 1259 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 DSC1Q08554 894 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 CAPSQ13938 189 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 HAUS3Q68CZ6 603 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 OTOP3Q7RTS5 596 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 COLGALT2Q8IYK4 626 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 SMG8Q8ND04 991 aaKnown RBP13.21□□□□□ -0.29
UPF3B-204ENST00000619445 CMASQ8NFW8 434 aaPredicted RBP13.21□□□□□ -0.29
UPF3B-204ENST00000619445 HDAC7Q8WUI4 952 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 C8orf76Q96K31 380 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 ZSCAN31Q96LW9 406 aaPredicted RBP13.21□□□□□ -0.29
UPF3B-204ENST00000619445 RPS6KC1Q96S38 1066 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 HERC2P3Q9BVR0 1158 aa13.21□□□□□ -0.29
UPF3B-204ENST00000619445 POLR3FQ9H1D9 316 aaPredicted RBP13.21□□□□□ -0.29
UPF3B-204ENST00000619445 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.21□□□□□ -0.29
UPF3B-204ENST00000619445 A0A1B0GUA9 196 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 ZBTB39O15060 712 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 JAK2O60674 1132 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 LILRB3O75022 631 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 LARGE1O95461 756 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 EPCAMP16422 314 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 ARF4P18085 180 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 GLRA2P23416 452 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 RPA1P27694 616 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 MCM7P33993 719 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 MLH1P40692 756 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 OR1G1P47890 313 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 GLUD2P49448 558 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 RBM25P49756 843 aaKnown RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 CLCN4P51793 760 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 GRIK3Q13003 919 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 GNL2Q13823 731 aaKnown RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 PPP2R5AQ15172 486 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 FAM187BQ17R55 369 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 CCDC149Q6ZUS6 474 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 APBB1IPQ7Z5R6 666 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 GPR149Q86SP6 731 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 KREMEN2Q8NCW0 462 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 ASAP3Q8TDY4 903 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 BCL7CQ8WUZ0 217 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 AUTS2Q8WXX7 1259 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 ASIC4Q96FT7 647 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 KLHL5Q96PQ7 755 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 GAD1Q99259 594 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 RAB34Q9BZG1 259 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 SH2B1Q9NRF2 756 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 POTEMA6NI47 508 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 LRRIQ4A6NIV6 560 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 C2CD4DB7Z1M9 353 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 USO1O60763 962 aaKnown RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 CNPP09543 421 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms