RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 VPS37CA5D8V6 355 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 ARL5CA6NH57 179 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 HIDE1A8MVS5 230 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 E9PMD0 336 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 SRGAP2BP0DMP2 458 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 MLH1P40692 756 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 AFF1P51825 1210 aaKnown RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 SMAD4Q13485 552 aaKnown RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 PRPF4BQ13523 1007 aaKnown RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 TMEM132AQ24JP5 1023 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 TMEM173Q86WV6 379 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 VPS52Q8N1B4 723 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 MMTAG2Q9BU76 263 aaKnown RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 APOL6Q9BWW8 343 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 RNF39Q9H2S5 420 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 NXF3Q9H4D5 531 aaKnown RBP16.87■□□□□ 0.29
TRIM28-203ENST00000593582 DNAJB4Q9UDY4 337 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 GIT1Q9Y2X7 761 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 N4BP3O15049 544 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 DDHD2O94830 711 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 NPTXRO95502 500 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 GLP2RO95838 553 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 BMP15O95972 392 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 ALDH2P05091 517 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 PRKCBP05771 671 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 SSTR3P32745 418 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-203ENST00000593582 CA8P35219 290 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 SLC11A1P49279 550 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 EFNA5P52803 228 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 SMAD2Q15796 467 aaKnown RBP16.86■□□□□ 0.29
TRIM28-203ENST00000593582 DDX53Q86TM3 631 aaKnown RBP16.86■□□□□ 0.29
TRIM28-203ENST00000593582 CDR2LQ86X02 465 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-203ENST00000593582 GJD3Q8N144 294 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 KCTD17Q8N5Z5 321 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 MRPL43Q8N983 215 aaKnown RBP16.86■□□□□ 0.29
TRIM28-203ENST00000593582 CDK5RAP3Q96JB5 506 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 MSLNLQ96KJ4 702 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 AK8Q96MA6 479 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 GAD1Q99259 594 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 TMEM175Q9BSA9 504 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 NT5C3AQ9H0P0 336 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 CLEC1BQ9P126 229 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 STK39Q9UEW8 545 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 PRKAG3Q9UGI9 489 aa16.86■□□□□ 0.29
TRIM28-203ENST00000593582 BARX2Q9UMQ3 279 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-203ENST00000593582 ACKR2O00590 384 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 INPPL1O15357 1258 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 MBTPS2O43462 519 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 B4GALT3O60512 393 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 CXCL14O95715 111 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 LIG1P18858 919 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 COASYQ13057 564 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 HYIQ5T013 277 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 TMEM87AQ8NBN3 555 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 INTS4Q96HW7 963 aaKnown RBP16.85■□□□□ 0.29
TRIM28-203ENST00000593582 DRC1Q96MC2 740 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 ZFP42Q96MM3 310 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 ADPGKQ9BRR6 497 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 KIFC3Q9BVG8 833 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 CCDC113Q9H0I3 377 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 POLD4Q9HCU8 107 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 FAN1Q9Y2M0 1017 aa16.85■□□□□ 0.29
TRIM28-203ENST00000593582 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-203ENST00000593582 C2orf71A6NGG8 1288 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 CCDC169A6NNP5 214 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 HIP1RO75146 1068 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 NR1I2O75469 434 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 SSBP05455 408 aaKnown RBP eCLIP16.84■□□□□ 0.29
TRIM28-203ENST00000593582 AKAP5P24588 427 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 SCNN1GP51170 649 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 DMP1Q13316 513 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-203ENST00000593582 GIT2Q14161 759 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 RINT1Q6NUQ1 792 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 TMEM184AQ6ZMB5 413 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 KCNK18Q7Z418 384 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 ADHFE1Q8IWW8 467 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 SMRP1Q8NCR6 262 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 VN1R2Q8NFZ6 395 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 BCL7CQ8WUZ0 217 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-203ENST00000593582 RUSC1Q9BVN2 902 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 TIPINQ9BVW5 301 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 ZBP1Q9H171 429 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 PDZD7Q9H5P4 517 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 DAXXQ9UER7 740 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-203ENST00000593582 PARP2Q9UGN5 583 aa16.84■□□□□ 0.29
TRIM28-203ENST00000593582 TTLL13PA6NNM8 815 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 K7ELQ4 463 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-203ENST00000593582 K7ERI5 159 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 NRP1O14786 923 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 SLC26A4O43511 780 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 CTSAP10619 480 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 UBA7P41226 1012 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 OR1G1P47890 313 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 NPTX2P47972 431 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 PEX3P56589 373 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 RBM10P98175 930 aaKnown RBP16.83■□□□□ 0.28
TRIM28-203ENST00000593582 ZP2Q05996 745 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 LLGL2Q6P1M3 1020 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 C1orf186Q6ZWK4 172 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 CABP7Q86V35 215 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms