RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 DNAJB12Q9NXW2 375 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 USP25Q9UHP3 1055 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 DNM3Q9UQ16 869 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 PTPN22Q9Y2R2 807 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 A0A087WWV3 80 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 A0A087X0B3 334 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 GSTTP1A0A1W2PQM5 241 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 ARHGEF35A5YM69 484 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 E9PMD0 336 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 CTAGE5O15320 804 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 SEPT4O43236 478 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 ADCY6O43306 1168 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 DUSP11O75319 330 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 SLITRK3O94933 977 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 IGHA2P01877 340 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 KRT18P05783 430 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 MMP3P08254 477 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 MYL3P08590 195 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 C6orf222P0C671 652 aaPredicted RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 SLFN14P0C7P3 912 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 PLA2G4BP0C869 781 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 SPATA31C1P0DKV0 1188 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 MUTP22033 750 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 PTGS1P23219 599 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 MARK3P27448 753 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 YWHABP31946 246 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 AFMP43652 599 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 EIF1AXP47813 144 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 STAT5BP51692 787 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 CHMP4BP1P59074 171 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 AMPD3Q01432 767 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 ZNF211Q13398 564 aaPredicted RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 ECM1Q16610 540 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 DGKDQ16760 1214 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 TMEM119Q4V9L6 283 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 HYIQ5T013 277 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 ABHD15Q6UXT9 468 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 SV2BQ7L1I2 683 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 OTUD6AQ7L8S5 288 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 CTU1Q7Z7A3 348 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 ATCAYQ86WG3 371 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 CCDC60Q8IWA6 550 aaPredicted RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 TRPV1Q8NER1 839 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 PIGOQ8TEQ8 1089 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 SH3TC2Q8TF17 1288 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 EDEM1Q92611 657 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 LARP4BQ92615 738 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 RAD54LQ92698 747 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 TIGD1Q96MW7 591 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 HSD17B14Q9BPX1 270 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 LRRC27Q9C0I9 530 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 GZF1Q9H116 711 aaPredicted RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 BHMT2Q9H2M3 363 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 CLSTN2Q9H4D0 955 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 SMARCAD1Q9H4L7 1026 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 MAGEF1Q9HAY2 307 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 XPNPEP3Q9NQH7 507 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 EGFL7Q9UHF1 273 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 ZNF215Q9UL58 517 aaPredicted RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 GNEQ9Y223 722 aaKnown RBP5.9□□□□□ -1.46
LIG3-210ENST00000588109 Q9Y3F1 56 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 TELO2Q9Y4R8 837 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 KCNMB2Q9Y691 235 aa5.9□□□□□ -1.46
LIG3-210ENST00000588109 IGSF9BQ9UPX0 1349 aa5.9□□□□□ -1.47
LIG3-210ENST00000588109 ZEB2O60315 1214 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 MSCO60682 206 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 ICMTO60725 284 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 PPFIA4O75335 1185 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 LETM1O95202 739 aaPredicted RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 SMC2O95347 1197 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 EYA4O95677 639 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 LGALS2P05162 132 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 ZNF286BP0CG31 522 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 MZF1P28698 734 aaPredicted RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 IRS1P35568 1242 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 SLC26A2P50443 739 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 PSMC6P62333 389 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 BEX3Q00994 111 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 PRKCEQ02156 737 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 PLAURQ03405 335 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 POSTNQ15063 836 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 FSCN1Q16658 493 aaKnown RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 UGCGQ16739 394 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 MTERF2Q49AM1 385 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 NAALADL2Q58DX5 795 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 XKR9Q5GH70 373 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 XKR3Q5GH77 459 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 FAM26DQ5JW98 314 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 MAP3K21Q5TCX8 1036 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 PLA2G4FQ68DD2 849 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 FBXO46Q6PJ61 603 aaPredicted RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 PLPPR4Q7Z2D5 763 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 KCNK18Q7Z418 384 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 FAM35AQ86V20 835 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 GPBP1Q86WP2 473 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 C4orf19Q8IY42 314 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 GRAMD1CQ8IYS0 662 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 MICALL1Q8N3F8 863 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 AFAP1L1Q8TED9 768 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 STAMQ92783 540 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms