RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FSCN2O14926 492 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 SLC26A4O43511 780 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 STX6O43752 255 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 LONP1P36776 959 aaKnown RBP26.37■■□□□ 1.81
SHMT1-206ENST00000579558 NRIP1P48552 1158 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 AFF1P51825 1210 aaKnown RBP26.37■■□□□ 1.81
SHMT1-206ENST00000579558 EFNA5P52803 228 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 GRIN1Q05586 938 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 CTC1Q2NKJ3 1217 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 PLPP4Q5VZY2 271 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 FAM173BQ6P4H8 233 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 RBM23Q86U06 439 aaKnown RBP26.37■■□□□ 1.81
SHMT1-206ENST00000579558 ZNF280BQ86YH2 543 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 DAW1Q8N136 415 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 CALML4Q96GE6 196 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 TMEM169Q96HH4 297 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 DRC1Q96MC2 740 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 FAM193BQ96PV7 902 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-206ENST00000579558 TCF25Q9BQ70 676 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 ENTPD7Q9NQZ7 604 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 DNAJB4Q9UDY4 337 aa26.37■■□□□ 1.81
SHMT1-206ENST00000579558 TTLL13PA6NNM8 815 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 CCDC169A6NNP5 214 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 ACKR2O00590 384 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 N4BP3O15049 544 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 POMCP01189 267 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 MLH1P40692 756 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 PEX3P56589 373 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 SYT2Q8N9I0 419 aaPredicted RBP26.36■■□□□ 1.81
SHMT1-206ENST00000579558 GADD45GIP1Q8TAE8 222 aaPredicted RBP26.36■■□□□ 1.81
SHMT1-206ENST00000579558 GAD1Q99259 594 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 TIPINQ9BVW5 301 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 PDZD7Q9H5P4 517 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 TLE6Q9H808 572 aa26.36■■□□□ 1.81
SHMT1-206ENST00000579558 ARL5CA6NH57 179 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 LINC01565O15544 149 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 B4GALT3O60512 393 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 GALTP07902 379 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 PLA2G4BP0C869 781 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 GUCY2CP25092 1073 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 LTBRP36941 435 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 SLC11A1P49279 550 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 MAPK7Q13164 816 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 DMP1Q13316 513 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-206ENST00000579558 PTPAQ15257 358 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 TMC7Q7Z402 723 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 RASSF8Q8NHQ8 419 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 NECAB3Q96P71 396 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-206ENST00000579558 ZSCAN16Q9H4T2 348 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-206ENST00000579558 USP20Q9Y2K6 914 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 GIT1Q9Y2X7 761 aa26.35■■□□□ 1.81
SHMT1-206ENST00000579558 INPPL1O15357 1258 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 DDHD2O94830 711 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 HSP90AA1P07900 732 aaKnown RBP26.34■■□□□ 1.81
SHMT1-206ENST00000579558 AKAP5P24588 427 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 NPTX2P47972 431 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 SLC12A3P55017 1021 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 RAD51AP2Q09MP3 1159 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 ADAM15Q13444 863 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 PTCRAQ6ISU1 281 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-206ENST00000579558 TMEM173Q86WV6 379 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-206ENST00000579558 EFHBQ8N7U6 833 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 IGSF21Q96ID5 467 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 ADPGKQ9BRR6 497 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 NGRNQ9NPE2 291 aaKnown RBP26.34■■□□□ 1.81
SHMT1-206ENST00000579558 PARP2Q9UGN5 583 aa26.34■■□□□ 1.81
SHMT1-206ENST00000579558 K7ERI5 159 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 PER2O15055 1255 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 TBX10O75333 385 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 EDN1P05305 212 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 MARCKSP29966 332 aaPredicted RBP26.33■■□□□ 1.81
SHMT1-206ENST00000579558 NDUFV1P49821 464 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 SCNN1GP51170 649 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 CEBPZQ03701 1054 aaKnown RBP26.33■■□□□ 1.81
SHMT1-206ENST00000579558 DLX2Q07687 328 aaPredicted RBP26.33■■□□□ 1.81
SHMT1-206ENST00000579558 PUS10Q3MIT2 529 aaKnown RBP26.33■■□□□ 1.81
SHMT1-206ENST00000579558 ZFP42Q96MM3 310 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 TMEM175Q9BSA9 504 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 C17orf75Q9HAS0 396 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 KMT5AQ9NQR1 393 aa26.33■■□□□ 1.81
SHMT1-206ENST00000579558 SFI1A8K8P3 1242 aa26.32■■□□□ 1.8
SHMT1-206ENST00000579558 KARSQ15046 597 aaKnown RBP26.32■■□□□ 1.8
SHMT1-206ENST00000579558 BCL7CQ8WUZ0 217 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-206ENST00000579558 CDCA3Q99618 268 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-206ENST00000579558 KCND2Q9NZV8 630 aa26.32■■□□□ 1.8
SHMT1-206ENST00000579558 PHLPP2Q6ZVD8 1323 aa26.32■■□□□ 1.8
SHMT1-206ENST00000579558 TDRD15B5MCY1 1934 aaKnown RBP26.31■■□□□ 1.8
SHMT1-206ENST00000579558 TNFRSF10AO00220 468 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 ALDH2P05091 517 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 PLCG1P19174 1290 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 SMC1AQ14683 1233 aaKnown RBP26.31■■□□□ 1.8
SHMT1-206ENST00000579558 BMS1Q14692 1282 aaKnown RBP26.31■■□□□ 1.8
SHMT1-206ENST00000579558 CLUL1Q15846 466 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 DUSP6Q16828 381 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 NT5DC1Q5TFE4 455 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 EEF1DP3Q658K8 133 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 DDX53Q86TM3 631 aaKnown RBP26.31■■□□□ 1.8
SHMT1-206ENST00000579558 VPS52Q8N1B4 723 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 USP28Q96RU2 1077 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 MIOSQ9NXC5 875 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms