RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 MRPL4Q9BYD3 311 aaKnown RBP9.41□□□□□ -0.9
NUP88-211ENST00000575976 UBE2OQ9C0C9 1292 aaKnown RBP9.41□□□□□ -0.9
NUP88-211ENST00000575976 IKZF4Q9H2S9 585 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 CHST12Q9NRB3 414 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 RGS18Q9NS28 235 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 RMND1Q9NWS8 449 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 MAN1B1Q9UKM7 699 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 TBX20Q9UMR3 447 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 GDAQ9Y2T3 454 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 PCDHB13Q9Y5F0 798 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 TET1Q8NFU7 2136 aa9.41□□□□□ -0.9
NUP88-211ENST00000575976 CNTNAP2Q9UHC6 1331 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 A0A1B0GUA9 196 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.4□□□□□ -0.9
NUP88-211ENST00000575976 BIN1O00499 593 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 BAIAP3O94812 1187 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 PTMSP20962 102 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 SCP2P22307 547 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 ABCD1P33897 745 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 ALCAMQ13740 583 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 NFKBIBQ15653 356 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 TMEM132AQ24JP5 1023 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 UBXN11Q5T124 520 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 ATF7IP2Q5U623 682 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 EEF1DP3Q658K8 133 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 TWF2Q6IBS0 349 aaKnown RBP9.4□□□□□ -0.9
NUP88-211ENST00000575976 NOTUMQ6P988 496 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 STXBP4Q6ZWJ1 553 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 MAP4K3Q8IVH8 894 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 SCFD1Q8WVM8 642 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 HERVK_113Q902F9 699 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 ZBTB45Q96K62 511 aaPredicted RBP9.4□□□□□ -0.9
NUP88-211ENST00000575976 ACCSQ96QU6 501 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 PDZD7Q9H5P4 517 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 CXXC1Q9P0U4 656 aaPredicted RBP9.4□□□□□ -0.9
NUP88-211ENST00000575976 TMEM63CQ9P1W3 806 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 KIAA1468Q9P260 1216 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 TNFSF13BQ9Y275 285 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 MYH11P35749 1972 aa9.4□□□□□ -0.9
NUP88-211ENST00000575976 ZBBXA8MT70 800 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 TISP43B9A030 160 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 C9IYK1 514 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 ANKRD63C9JTQ0 380 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 N4BP3O15049 544 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 EIF3DO15371 548 aaKnown RBP eCLIP9.39□□□□□ -0.91
NUP88-211ENST00000575976 EFCAB14O75071 495 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 NPTXRO95502 500 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 PIGRP01833 764 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 IBSPP21815 317 aaPredicted RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 HOXD13P35453 343 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 LIG4P49917 911 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 WDR5P61964 334 aaKnown RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 FAM189BP81408 668 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 DEFB103AP81534 67 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 ZNF658Q5TYW1 1059 aaPredicted RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 SLC39A4Q6P5W5 647 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 ZPBP2Q6X784 338 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 FAM43BQ6ZT52 329 aaPredicted RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 SLC24A5Q71RS6 500 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 NELFCDQ8IXH7 590 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 SMYD4Q8IYR2 804 aaPredicted RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 CCDC51Q96ER9 411 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 BICD1Q96G01 975 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 EIF2AQ9BY44 585 aaKnown RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 TSPYL2Q9H2G4 693 aaPredicted RBP9.39□□□□□ -0.91
NUP88-211ENST00000575976 TMEM206Q9H813 350 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 PTPRHQ9HD43 1115 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 C1orf112Q9NSG2 853 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 FAM105AQ9NUU6 356 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 EXOC7Q9UPT5 735 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 MAPK8IP1Q9UQF2 711 aa9.39□□□□□ -0.91
NUP88-211ENST00000575976 A0A0U1RQF3 1178 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 ABLIM1O14639 778 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 HNRNPDLO14979 420 aaKnown RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 TOM1L1O75674 476 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 UPP2O95045 317 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 AMHP03971 560 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 PRKCSHP14314 528 aaPredicted RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 BMP6P22004 513 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 PROZP22891 400 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 KCNJ6P48051 423 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 MORC3Q14149 939 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 KNOP1Q1ED39 458 aaKnown RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 BMT2Q1RMZ1 405 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 KLHL40Q2TBA0 621 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 ZNF568Q3ZCX4 644 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 CCDC183Q5T5S1 534 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 RASIP1Q5U651 963 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 CAVIN1Q6NZI2 390 aaKnown RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 SLC27A1Q6PCB7 646 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 MPZL3Q6UWV2 235 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 RBM43Q6ZSC3 357 aaKnown RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 TMCO2Q7Z6W1 182 aaPredicted RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 ZBTB33Q86T24 672 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 ECHDC2Q86YB7 292 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 MYOCDQ8IZQ8 938 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 SYCP3Q8IZU3 236 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 RNPC3Q96LT9 517 aaKnown RBP9.38□□□□□ -0.91
NUP88-211ENST00000575976 ADPGKQ9BRR6 497 aa9.38□□□□□ -0.91
NUP88-211ENST00000575976 TCHPQ9BT92 498 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms