RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FUT4P22083 530 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 GPSM2P81274 684 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 FSTL1Q12841 308 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 BIRC3Q13489 604 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 LRP8Q14114 963 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 GBX1Q14549 363 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 MINDY4Q4G0A6 757 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 RALGPS1Q5JS13 557 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 CIAPIN1Q6FI81 312 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 SLC23A3Q6PIS1 610 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 LMBR1LQ6UX01 489 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 LDHAL6AQ6ZMR3 332 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 PNMA8AQ86V59 439 aaPredicted RBP7.11□□□□□ -1.27
VPS53-212ENST00000572259 CREBRFQ8IUR6 639 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 PPIL6Q8IXY8 311 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 AHI1Q8N157 1196 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 SMC1BQ8NDV3 1235 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 VPS37AQ8NEZ2 397 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 TBC1D16Q8TBP0 767 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 USP33Q8TEY7 942 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 FRS2Q8WU20 508 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 FRAT1Q92837 279 aaPredicted RBP7.11□□□□□ -1.27
VPS53-212ENST00000572259 KISS1RQ969F8 398 aaPredicted RBP7.11□□□□□ -1.27
VPS53-212ENST00000572259 TIFAQ96CG3 184 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 CNNM1Q9NRU3 951 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 EVLQ9UI08 416 aaPredicted RBP7.11□□□□□ -1.27
VPS53-212ENST00000572259 HACL1Q9UJ83 578 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 TMEM59LQ9UK28 342 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 TRHDEQ9UKU6 1024 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 UTYO14607 1347 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 BLACEA4D250 179 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 HYAL3O43820 417 aaPredicted RBP7.1□□□□□ -1.27
VPS53-212ENST00000572259 PIP5K1CO60331 668 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 NPTXRO95502 500 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 GNAI3P08754 354 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 SERPINB3P29508 390 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 HK2P52789 917 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 GJA9P57773 515 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 FOXO4P98177 505 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 STRN3Q13033 797 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 LAPTM5Q13571 262 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 DHCR24Q15392 516 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 SAFBQ15424 915 aaKnown RBP eCLIP7.1□□□□□ -1.27
VPS53-212ENST00000572259 SLC35F1Q5T1Q4 408 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 E4F1Q66K89 784 aaPredicted RBP7.1□□□□□ -1.27
VPS53-212ENST00000572259 CNNM4Q6P4Q7 775 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 ATF7IPQ6VMQ6 1270 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 SPPL2CQ8IUH8 684 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 SUGP1Q8IWZ8 645 aaKnown RBP7.1□□□□□ -1.27
VPS53-212ENST00000572259 FTSJ3Q8IY81 847 aaKnown RBP7.1□□□□□ -1.27
VPS53-212ENST00000572259 NPLOC4Q8TAT6 608 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 DIO2Q92813 273 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 TTC17Q96AE7 1141 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 MAP6Q96JE9 813 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 CCDC8Q9H0W5 538 aaPredicted RBP7.1□□□□□ -1.27
VPS53-212ENST00000572259 ERVK13-1Q9NX77 482 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 TNFRSF10DQ9UBN6 386 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 POLLQ9UGP5 575 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 HDAC9Q9UKV0 1011 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 IPPQ9Y573 584 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 WDR90Q96KV7 1748 aa7.1□□□□□ -1.27
VPS53-212ENST00000572259 H7C1D1 291 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 GABRDO14764 452 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 NBNO60934 754 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 CXCL9Q07325 125 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 CYP4F3Q08477 520 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 CHAF1AQ13111 956 aaPredicted RBP7.09□□□□□ -1.27
VPS53-212ENST00000572259 STAT4Q14765 748 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 SLC14A2Q15849 920 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 SYDE2Q5VT97 1194 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 WFDC3Q8IUB2 231 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 OXR1Q8N573 874 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 ANKS4BQ8N8V4 417 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 KREMEN2Q8NCW0 462 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 DCAF4Q8WV16 495 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 LEO1Q8WVC0 666 aaPredicted RBP7.09□□□□□ -1.27
VPS53-212ENST00000572259 USP44Q9H0E7 712 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 ZNF281Q9Y2X9 895 aa7.09□□□□□ -1.27
VPS53-212ENST00000572259 LUC7L2Q9Y383 392 aaKnown RBP7.09□□□□□ -1.27
VPS53-212ENST00000572259 MORC2Q9Y6X9 1032 aaPredicted RBP7.09□□□□□ -1.27
VPS53-212ENST00000572259 SNED1Q8TER0 1413 aa7.09□□□□□ -1.28
VPS53-212ENST00000572259 SPEF2Q9C093 1822 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 ZNF804BA4D1E1 1349 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 ZNF541Q9H0D2 1346 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 LRRC37AA6NMS7 1700 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQ27 194 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQ64 194 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQC6 194 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQD8 194 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 ERC2O15083 957 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 ECE2O60344 883 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 BCAR3O75815 825 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 RAD17O75943 681 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 FBXO21O94952 628 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 ZGLP1P0C6A0 271 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 HSPA6P17066 643 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 RPS12P25398 132 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 EPHX2P34913 555 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 LTBRP36941 435 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 KIR2DL1P43626 348 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms