RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 BMP15O95972 392 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 NDUFV1P49821 464 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 EFNA5P52803 228 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 TMC7Q7Z402 723 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 TMEM173Q86WV6 379 aaPredicted RBP22.42■■□□□ 1.18
CLK3-225ENST00000569063 FAM178BQ8IXR5 827 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 MSLNLQ96KJ4 702 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 AK8Q96MA6 479 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 PNMA5Q96PV4 448 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 FAM193BQ96PV7 902 aaPredicted RBP22.42■■□□□ 1.18
CLK3-225ENST00000569063 TMEM175Q9BSA9 504 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 NT5C3AQ9H0P0 336 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 GBP3Q9H0R5 595 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 NXF3Q9H4D5 531 aaKnown RBP22.42■■□□□ 1.18
CLK3-225ENST00000569063 POLD4Q9HCU8 107 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 CLEC1BQ9P126 229 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 GIT1Q9Y2X7 761 aa22.42■■□□□ 1.18
CLK3-225ENST00000569063 VPS37CA5D8V6 355 aaPredicted RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 HIDE1A8MVS5 230 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 K7ELQ4 463 aaPredicted RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 ACKR2O00590 384 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 NPTXRO95502 500 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 POMCP01189 267 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 SLC11A1P49279 550 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 PRPF4BQ13523 1007 aaKnown RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 SMC1AQ14683 1233 aaKnown RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 RINT1Q6NUQ1 792 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 C1orf186Q6ZWK4 172 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 DDX53Q86TM3 631 aaKnown RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 CDR2LQ86X02 465 aaPredicted RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 MRPL43Q8N983 215 aaKnown RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 GAD1Q99259 594 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 DAXXQ9UER7 740 aaPredicted RBP22.41■■□□□ 1.18
CLK3-225ENST00000569063 CD207Q9UJ71 328 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 GTF3C3Q9Y5Q9 886 aa22.41■■□□□ 1.18
CLK3-225ENST00000569063 ZMYM2Q9UBW7 1377 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 TTLL13PA6NNM8 815 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 N4BP3O15049 544 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 SLC26A4O43511 780 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 ALDH2P05091 517 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 PRKCBP05771 671 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 SYT1P21579 422 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 MLH1P40692 756 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 COASYQ13057 564 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 KCNC3Q14003 757 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 BMS1Q14692 1282 aaKnown RBP22.4■■□□□ 1.18
CLK3-225ENST00000569063 TMEM184AQ6ZMB5 413 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 DAW1Q8N136 415 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 RUSC1Q9BVN2 902 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 TIPINQ9BVW5 301 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 TTC28Q96AY4 2481 aa22.4■■□□□ 1.18
CLK3-225ENST00000569063 MBTPS2O43462 519 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 HIP1RO75146 1068 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 SMAD4Q13485 552 aaKnown RBP22.39■■□□□ 1.17
CLK3-225ENST00000569063 SF3A1Q15459 793 aaKnown RBP22.39■■□□□ 1.17
CLK3-225ENST00000569063 ZRSR1Q15695 479 aaKnown RBP22.39■■□□□ 1.17
CLK3-225ENST00000569063 SMAD2Q15796 467 aaKnown RBP22.39■■□□□ 1.17
CLK3-225ENST00000569063 CLUL1Q15846 466 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 VPS52Q8N1B4 723 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 SYT2Q8N9I0 419 aaPredicted RBP22.39■■□□□ 1.17
CLK3-225ENST00000569063 VN1R2Q8NFZ6 395 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 BCL7CQ8WUZ0 217 aaPredicted RBP22.39■■□□□ 1.17
CLK3-225ENST00000569063 DRC1Q96MC2 740 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 ZFP42Q96MM3 310 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 KIFC3Q9BVG8 833 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 APOL6Q9BWW8 343 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 ZBP1Q9H171 429 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 PDZD7Q9H5P4 517 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 C17orf75Q9HAS0 396 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 MIOSQ9NXC5 875 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 STK39Q9UEW8 545 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 PRKAG3Q9UGI9 489 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 FAN1Q9Y2M0 1017 aa22.39■■□□□ 1.17
CLK3-225ENST00000569063 C2orf71A6NGG8 1288 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 NRP1O14786 923 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 AKAP5P24588 427 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 GUCY2CP25092 1073 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 NPTX2P47972 431 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 DSC1Q08554 894 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 MAPK7Q13164 816 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 TMEM119Q4V9L6 283 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 CABP7Q86V35 215 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 COLGALT2Q8IYK4 626 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 SMRP1Q8NCR6 262 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 GSTCDQ8NEC7 633 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 SNX21Q969T3 373 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 CDK5RAP3Q96JB5 506 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 BARX2Q9UMQ3 279 aaPredicted RBP22.38■■□□□ 1.17
CLK3-225ENST00000569063 IRAK3Q9Y616 596 aa22.38■■□□□ 1.17
CLK3-225ENST00000569063 K7ERI5 159 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 CXCL14O95715 111 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 EDN1P05305 212 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 CTSAP10619 480 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 LONP1P36776 959 aaKnown RBP22.37■■□□□ 1.17
CLK3-225ENST00000569063 SCNN1GP51170 649 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 SLC12A3P55017 1021 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 PEX3P56589 373 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 RBM10P98175 930 aaKnown RBP22.37■■□□□ 1.17
CLK3-225ENST00000569063 GIT2Q14161 759 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 PLIN2Q99541 437 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms