RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 SPATA31D3P0C874 917 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 IFNAR1P17181 557 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 PHKA2P46019 1235 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SHC2P98077 582 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 BMS1Q14692 1282 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 N4BP2L1Q5TBK1 243 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SWSAP1Q6NVH7 229 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 PDXDC2PQ6P474 469 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SPATA31D4Q6ZUB0 917 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 RNF168Q8IYW5 571 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 ZNF687Q8N1G0 1237 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 CMTR1Q8N1G2 835 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 LRRC71Q8N4P6 559 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SRBD1Q8N5C6 995 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 METTL13Q8N6R0 699 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SMG7Q92540 1137 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 WASF1Q92558 559 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SDF4Q9BRK5 362 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 MYL10Q9BUA6 226 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 EMILIN2Q9BXX0 1053 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 BCO2Q9BYV7 579 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 NCOA5Q9HCD5 579 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 LTB4R2Q9NPC1 389 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 MARCH5Q9NX47 278 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 ANGPTL2Q9UKU9 493 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 DOCK6Q96HP0 2047 aa13.37□□□□□ -0.27
VPS9D1-207ENST00000568691 SPDYE4A6NLX3 237 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 MEIS1O00470 390 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 BACH1O14867 736 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 TM4SF5O14894 197 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 TARSP26639 723 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 GPC3P51654 580 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 DRP2Q13474 957 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 UBXN2BQ14CS0 331 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 MLF2Q15773 248 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 NTRK3Q16288 839 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 SLC44A4Q53GD3 710 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 NOMO2Q5JPE7 1267 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 CYP26C1Q6V0L0 522 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 GET4Q7L5D6 327 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 COL26A1Q96A83 441 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 RRP36Q96EU6 259 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 TRAIPQ9BWF2 469 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 OSBPL6Q9BZF3 934 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 NT5C3AQ9H0P0 336 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 ZSCAN16Q9H4T2 348 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 ZNF302Q9NR11 478 aa13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 MAFBQ9Y5Q3 323 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-207ENST00000568691 VPS37CA5D8V6 355 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 F8W810 466 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 C2CD2LO14523 706 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 KIF5BP33176 963 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 SKOR2Q2VWA4 1001 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 CEP55Q53EZ4 464 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 TYW1BQ6NUM6 668 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 EFCAB12Q6NXP0 572 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 POTEHQ6S545 545 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 TRMT1LQ7Z2T5 733 aaKnown RBP13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 TRIM22Q8IYM9 498 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 FANCBQ8NB91 859 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 STAMQ92783 540 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 RPS6KC1Q96S38 1066 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 RNF26Q9BY78 433 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 GBP3Q9H0R5 595 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 RXFP1Q9HBX9 757 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 FAM217BQ9NTX9 383 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.35□□□□□ -0.278e-11■■■■■ 37.2
VPS9D1-207ENST00000568691 ORC3Q9UBD5 711 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 AKT3Q9Y243 479 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 INPP5FQ9Y2H2 1132 aa13.35□□□□□ -0.27
VPS9D1-207ENST00000568691 WDFY3Q8IZQ1 3526 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 H3BQV1 296 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 PROS1P07225 676 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 CDC27P30260 824 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 NTHL1P78549 312 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 MTAPQ13126 283 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 NBR1Q14596 966 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 FAM160B1Q5W0V3 765 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 ATL3Q6DD88 541 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 LILRA6Q6PI73 481 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 AGMOQ6ZNB7 445 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 FAM177A1Q8N128 213 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 CTCFLQ8NI51 663 aaPredicted RBP13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 SECISBP2LQ93073 1101 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 SHDQ96IW2 340 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 MRPL17Q9NRX2 175 aaKnown RBP13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 SEMA4GQ9NTN9 838 aa13.34□□□□□ -0.27
VPS9D1-207ENST00000568691 SPDYE3A6NKU9 549 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 FAM86B1E9PN63 330 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 NRP1O14786 923 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 ZNF862O60290 1169 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 GLUD1P00367 558 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 SOD2P04179 222 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 FAM86B2P0C5J1 330 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 FDPSP14324 419 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 SMARCA1P28370 1054 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 GNAQP50148 359 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 PRKCQQ04759 706 aa13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 SSRP1Q08945 709 aaKnown RBP13.33□□□□□ -0.28
VPS9D1-207ENST00000568691 PRR23CQ6ZRP0 262 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms