RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GNL2Q13823 731 aaKnown RBP16.48■□□□□ 0.23
CLN3-213ENST00000565047 SMC1AQ14683 1233 aaKnown RBP16.48■□□□□ 0.23
CLN3-213ENST00000565047 HAUS3Q68CZ6 603 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 COLGALT2Q8IYK4 626 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 RNF168Q8IYW5 571 aaPredicted RBP16.48■□□□□ 0.23
CLN3-213ENST00000565047 VPS52Q8N1B4 723 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 TMEM169Q96HH4 297 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 TMEM175Q9BSA9 504 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 KANSL3Q9P2N6 904 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 KIAA1024Q9UPX6 916 aa16.48■□□□□ 0.23
CLN3-213ENST00000565047 USP15Q9Y4E8 981 aaPredicted RBP16.48■□□□□ 0.23
CLN3-213ENST00000565047 LOC730098B7Z3J9 87 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 NRP1O14786 923 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 CXCL14O95715 111 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 POMCP01189 267 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 ITGA4P13612 1032 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 CDC25AP30304 524 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 CCT6AP40227 531 aaKnown RBP16.47■□□□□ 0.23
CLN3-213ENST00000565047 NAMPTP43490 491 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 ATP2C1P98194 919 aaPredicted RBP16.47■□□□□ 0.23
CLN3-213ENST00000565047 RILPL1Q5EBL4 403 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 ANKRD54Q6NXT1 300 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 SLC27A1Q6PCB7 646 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 CDR2LQ86X02 465 aaPredicted RBP16.47■□□□□ 0.23
CLN3-213ENST00000565047 URGCPQ8TCY9 931 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 PRIMPOLQ96LW4 560 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 ZFP42Q96MM3 310 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 CCDC43Q96MW1 224 aaKnown RBP16.47■□□□□ 0.23
CLN3-213ENST00000565047 GAD1Q99259 594 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 LRFN3Q9BTN0 628 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 BHMT2Q9H2M3 363 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 NXF3Q9H4D5 531 aaKnown RBP16.47■□□□□ 0.23
CLN3-213ENST00000565047 POLD4Q9HCU8 107 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 PRMT7Q9NVM4 692 aaPredicted RBP16.47■□□□□ 0.23
CLN3-213ENST00000565047 MARCH5Q9NX47 278 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 GIT1Q9Y2X7 761 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 HCFC2Q9Y5Z7 792 aa16.47■□□□□ 0.23
CLN3-213ENST00000565047 ARHGEF35A5YM69 484 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 LRRIQ4A6NIV6 560 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 ALDH2P05091 517 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 SSTR3P32745 418 aaPredicted RBP16.46■□□□□ 0.23
CLN3-213ENST00000565047 MLH1P40692 756 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 RNASELQ05823 741 aaKnown RBP16.46■□□□□ 0.23
CLN3-213ENST00000565047 NCBP1Q09161 790 aaKnown RBP16.46■□□□□ 0.23
CLN3-213ENST00000565047 CUL4AQ13619 759 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 CBX2Q14781 532 aaPredicted RBP16.46■□□□□ 0.23
CLN3-213ENST00000565047 HYIQ5T013 277 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 KCNK18Q7Z418 384 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 DAW1Q8N136 415 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 SLC22A17Q8WUG5 538 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 AUTS2Q8WXX7 1259 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 GBP3Q9H0R5 595 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 UPF2Q9HAU5 1272 aaKnown RBP16.46■□□□□ 0.23
CLN3-213ENST00000565047 DDX19AQ9NUU7 478 aaKnown RBP16.46■□□□□ 0.23
CLN3-213ENST00000565047 KIF3AQ9Y496 699 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 STK24Q9Y6E0 443 aa16.46■□□□□ 0.23
CLN3-213ENST00000565047 E9PMD0 336 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 ACKR2O00590 384 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 COL9A1P20849 921 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 AKAP5P24588 427 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 PTPN14Q15678 1187 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 DTHD1Q6ZMT9 781 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 C1orf186Q6ZWK4 172 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 SNX29Q8TEQ0 813 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 PDZD7Q9H5P4 517 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 RAPGEFL1Q9UHV5 662 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 USP20Q9Y2K6 914 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 ZMYM2Q9UBW7 1377 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 TRIOO75962 3097 aa16.45■□□□□ 0.22
CLN3-213ENST00000565047 F8W810 466 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 NPTXRO95502 500 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 HOXB8P17481 243 aaPredicted RBP16.44■□□□□ 0.22
CLN3-213ENST00000565047 SCNN1GP51170 649 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 MAPK7Q13164 816 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 MCTP1Q6DN14 999 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 LLGL2Q6P1M3 1020 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 TAS1R1Q7RTX1 841 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 FEZF2Q8TBJ5 459 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 PNMA5Q96PV4 448 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 POP1Q99575 1024 aaKnown RBP16.44■□□□□ 0.22
CLN3-213ENST00000565047 KIFC3Q9BVG8 833 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 PHF7Q9BWX1 381 aaPredicted RBP16.44■□□□□ 0.22
CLN3-213ENST00000565047 C2orf40Q9H1Z8 148 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 CXCL16Q9H2A7 254 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 FAN1Q9Y2M0 1017 aa16.44■□□□□ 0.22
CLN3-213ENST00000565047 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.43■□□□□ 0.22
CLN3-213ENST00000565047 ALADP13716 330 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 GIT2Q14161 759 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 NAB2Q15742 525 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 HERC4Q5GLZ8 1057 aaPredicted RBP16.43■□□□□ 0.22
CLN3-213ENST00000565047 TMEM31Q5JXX7 168 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 NT5DC1Q5TFE4 455 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 KRT79Q5XKE5 535 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 EEF1DP3Q658K8 133 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 RINT1Q6NUQ1 792 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 RNF135Q8IUD6 432 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 ZBTB8OSQ8IWT0 167 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 KIFAP3Q92845 792 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 BACH2Q9BYV9 841 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 RAB34Q9BZG1 259 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms