RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 IPPKQ9H8X2 491 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 C14orf93Q9H972 538 aaKnown RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 UCKL1Q9NWZ5 548 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 ACTR10Q9NZ32 417 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 HS3ST4Q9Y661 456 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 PNPLA6Q8IY17 1366 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 PIK3R4Q99570 1358 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 YTHDC2Q9H6S0 1430 aaKnown RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 A0A1W2PQU0 124 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 TCRBV5S4A2TA0A5A2 114 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 UBE2QL1A1L167 161 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 KLRG2A4D1S0 409 aaPredicted RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 PRAMEF25A6NGN4 478 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 BCAR3O75815 825 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 IPO13O94829 963 aaKnown RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 IGHDP01880 384 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 STAT3P40763 770 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 CLK3P49761 638 aaKnown RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 RARSP54136 660 aaKnown RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 ELLP55199 621 aaPredicted RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 PLEKHG4Q58EX7 1191 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 FKBP15Q5T1M5 1219 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 KLHDC10Q6PID8 442 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 MAMDC2Q7Z304 686 aaPredicted RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 BEND2Q8NDZ0 799 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 PMFBP1Q8TBY8 1022 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 FRAT1Q92837 279 aaPredicted RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 GFM2Q969S9 779 aaKnown RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 SLC7A6OSQ96CW6 309 aaPredicted RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 PGBD4Q96DM1 585 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 CATSPERZQ9NTU4 200 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 BTBD7Q9P203 1132 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 MARF1Q9Y4F3 1742 aaKnown RBP3.09□□□□□ -1.91
SPG11-223ENST00000560858 IL16Q14005 1332 aa3.09□□□□□ -1.91
SPG11-223ENST00000560858 AK9Q5TCS8 1911 aa3.09□□□□□ -1.92
SPG11-223ENST00000560858 UBR1Q8IWV7 1749 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 XRN1Q8IZH2 1706 aaKnown RBP3.08□□□□□ -1.92
SPG11-223ENST00000560858 PEAK1Q9H792 1746 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 CRYBG1Q9Y4K1 1723 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 SCAMP3O14828 347 aaKnown RBP3.08□□□□□ -1.92
SPG11-223ENST00000560858 SMAD7O15105 426 aaKnown RBP3.08□□□□□ -1.92
SPG11-223ENST00000560858 LAG3P18627 525 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 MC4RP32245 332 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 AVPR1BP47901 424 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 RGS3P49796 1198 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 ST5P78524 1137 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 PAK1Q13153 545 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 BECN1Q14457 450 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 MVPQ14764 893 aaKnown RBP3.08□□□□□ -1.92
SPG11-223ENST00000560858 FIGNQ5HY92 759 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 STYK1Q6J9G0 422 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 LRSAM1Q6UWE0 723 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 HTR3DQ70Z44 454 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 OSTM1Q86WC4 334 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 ELOA2Q8IYF1 753 aaPredicted RBP3.08□□□□□ -1.92
SPG11-223ENST00000560858 LCORLQ8N3X6 602 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 TCP11L2Q8N4U5 519 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 ANKRD53Q8N9V6 530 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 CPT1CQ8TCG5 803 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 CALML6Q8TD86 181 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 AMNQ9BXJ7 453 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 R3HDMLQ9H3Y0 253 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 MYH16Q9H6N6 1097 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.08□□□□□ -1.92
SPG11-223ENST00000560858 EVC2Q86UK5 1308 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 KIF16BQ96L93 1317 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 TECPR2O15040 1411 aa3.08□□□□□ -1.92
SPG11-223ENST00000560858 KIF13AQ9H1H9 1805 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 B2RBV5 119 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 MAN2B1O00754 1011 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 GSTA4O15217 222 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 FRAT2O75474 233 aaPredicted RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 ONECUT2O95948 504 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 C1RP00736 705 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 ZNF16P17020 682 aaPredicted RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 KRT15P19012 456 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 NR4A1P22736 598 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 APEX1P27695 318 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 BPIFB4P59827 614 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 HDAC1Q13547 482 aaPredicted RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 ACAP1Q15027 740 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 MORC1Q86VD1 984 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 PTRH1Q86Y79 214 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 SMC5Q8IY18 1101 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 FAM43AQ8N2R8 423 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 MDGA1Q8NFP4 955 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 SMG7Q92540 1137 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 CFAP53Q96M91 514 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 PLEKHF1Q96S99 279 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 GPHA2Q96T91 129 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 SPATA5L1Q9BVQ7 753 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 IL23AQ9NPF7 189 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 TESQ9UGI8 421 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 SORCS3Q9UPU3 1222 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 TNNQ9UQP3 1299 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 RBM8AQ9Y5S9 174 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 CPSF1Q10570 1443 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 EDC4Q6P2E9 1401 aaKnown RBP3.07□□□□□ -1.92
SPG11-223ENST00000560858 A2ML1A8K2U0 1454 aa3.07□□□□□ -1.92
SPG11-223ENST00000560858 FSD2A1L4K1 749 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms