RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 IL13RA1P78552 427 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 MRPS9P82933 396 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 PFKPQ01813 784 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 ADCY1Q08828 1119 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 ABHD18Q0P651 414 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 IL10RAQ13651 578 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 LLGL1Q15334 1064 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 CSRP2Q16527 193 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 SKIDA1Q1XH10 827 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 C3orf36Q3SXR2 165 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 MINDY4Q4G0A6 757 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 MBNL2Q5VZF2 373 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 CD300LDQ6UXZ3 194 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 RNF207Q6ZRF8 634 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 GAREM2Q75VX8 874 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 OVCH2Q7RTZ1 564 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 KANSL1Q7Z3B3 1105 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 NME9Q86XW9 330 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 EXOC8Q8IYI6 725 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 THEMISQ8N1K5 641 aaPredicted RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 OR2I1PQ8NGU4 316 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 SLC35G2Q8TBE7 412 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 PARD3BQ8TEW8 1205 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 DIS3LQ8TF46 1054 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 NRG4Q8WWG1 115 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 AUTS2Q8WXX7 1259 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 DPF2Q92785 391 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 KAT5Q92993 513 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 HPS3Q969F9 1004 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 COA7Q96BR5 231 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 TOE1Q96GM8 510 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 AGAP2Q99490 1192 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 NUP88Q99567 741 aaPredicted RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 ACO2Q99798 780 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 FOXB1Q99853 325 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 FDXACB1Q9BRP7 624 aaPredicted RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 TACO1Q9BSH4 297 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 ACE2Q9BYF1 805 aaPredicted RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 PDGFDQ9GZP0 370 aaPredicted RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 CSRNP2Q9H175 543 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 MTG2Q9H4K7 406 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 IFT122Q9HBG6 1241 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 INCENPQ9NQS7 918 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 SLTMQ9NWH9 1034 aaKnown RBP eCLIP2.12□□□□□ -2.07
USP3-209ENST00000558925 GOLGA6AQ9NYA3 693 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 USP36Q9P275 1121 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 PRSS50Q9UI38 385 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 LIMCH1Q9UPQ0 1083 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 TCAF1Q9Y4C2 921 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 MYPNQ86TC9 1320 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 A0A0A6YYK5 440 aaPredicted RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 LOC102724159A0A0B4J2E5 919 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 LRRC14BA6NHZ5 514 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 PMM2O15305 246 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 HTRA2O43464 458 aaPredicted RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 CTNND1O60716 968 aaKnown RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 OPHN1O60890 802 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ZBTB7AO95365 584 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 LDHAP00338 332 aaKnown RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 ALDH2P05091 517 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 CYP2C8P10632 490 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 TRIM27P14373 513 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ZNF28P17035 718 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 PDCP20941 246 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 SERPINB3P29508 390 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ECE1P42892 770 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ITGA1P56199 1179 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ANTXR2P58335 489 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 CD83Q01151 205 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ROM1Q03395 351 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 COL10A1Q03692 680 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ADAM9Q13443 819 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 BIRC2Q13490 618 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 GTF2H3Q13889 308 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 SPIDRQ14159 915 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 PWP2Q15269 919 aaKnown RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 COBLL1Q53SF7 1204 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ATAT1Q5SQI0 421 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 KANK2Q63ZY3 851 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 VASNQ6EMK4 673 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 TIGD7Q6NT04 549 aaPredicted RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 SWSAP1Q6NVH7 229 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 DPY19L2P1Q6NXN4 242 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 LMBR1LQ6UX01 489 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ETV3LQ6ZN32 361 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 FAM124AQ86V42 546 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 SKAP1Q86WV1 359 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 MIER2Q8N344 545 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 STPG3Q8N7X2 389 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 DTX3Q8N9I9 347 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 KYQ8NBH2 561 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 FAM156AQ8NDB6 213 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 OR5AN1Q8NGI8 311 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 SVIPQ8NHG7 77 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 EXTL1Q92935 676 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 MVB12AQ96EY5 273 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 LCORQ96JN0 433 aaPredicted RBP2.11□□□□□ -2.07
USP3-209ENST00000558925 PSMD1Q99460 953 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 ARPC5LQ9BPX5 153 aa2.11□□□□□ -2.07
USP3-209ENST00000558925 NOL10Q9BSC4 688 aaKnown RBP2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms