RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 LLGL1Q15334 1064 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 FAM153CQ494X1 144 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 MAP9Q49MG5 647 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 HSP90B2PQ58FF3 399 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 TAS1R3Q7RTX0 852 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 PARD3BQ8TEW8 1205 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 TATDN2Q93075 761 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 ZNF668Q96K58 619 aaPredicted RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 ZBTB45Q96K62 511 aaPredicted RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 SYT11Q9BT88 431 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 DDX47Q9H0S4 455 aaKnown RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 FAM153AQ9UHL3 310 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 SPATA31C2B4DYI2 1134 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 RAD51CO43502 376 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 SYF2O95926 243 aaKnown RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 POLGP54098 1239 aaPredicted RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 OAZ1P54368 228 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 WNT7BP56706 349 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 ZNF211Q13398 564 aaPredicted RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 STXBP2Q15833 593 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 GNPTABQ3T906 1256 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 AADACL2Q6P093 401 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 PHLDB2Q86SQ0 1253 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 NOP9Q86U38 636 aaKnown RBP11.49□□□□□ -0.57
CUX1-217ENST00000558836 DDX42Q86XP3 938 aaKnown RBP eCLIP11.49□□□□□ -0.57
CUX1-217ENST00000558836 MAP4K3Q8IVH8 894 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 USP38Q8NB14 1042 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 PCDHB18PQ96TA0 734 aa11.49□□□□□ -0.57
CUX1-217ENST00000558836 HARSP12081 509 aaKnown RBP11.48□□□□□ -0.57
CUX1-217ENST00000558836 MCM3P25205 808 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 LMAN1P49257 510 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 ALCAMQ13740 583 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 SCARA3Q6AZY7 606 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 NT5DC3Q86UY8 548 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 CPNE8Q86YQ8 564 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 TSEN2Q8NCE0 465 aaKnown RBP11.48□□□□□ -0.57
CUX1-217ENST00000558836 AENQ8WTP8 325 aaKnown RBP11.48□□□□□ -0.57
CUX1-217ENST00000558836 BTBD6Q96KE9 485 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 NR2E1Q9Y466 385 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 LOXHD1Q8IVV2 1947 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 LRRIQ4A6NIV6 560 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 MAFGO15525 162 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 DGAT1O75907 488 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 MMEP08473 750 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 MARK3P27448 753 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 SSTR3P32745 418 aaPredicted RBP11.48□□□□□ -0.57
CUX1-217ENST00000558836 DRP2Q13474 957 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 MYBPC2Q14324 1141 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 C2CD6Q53TS8 623 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 WDR78Q5VTH9 848 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 SV2AQ7L0J3 742 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 ST6GALNAC4Q9H4F1 302 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 EXOC7Q9UPT5 735 aa11.48□□□□□ -0.57
CUX1-217ENST00000558836 ZC3H4Q9UPT8 1303 aaKnown RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 BTNL10A8MVZ5 291 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 AGPSO00116 658 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 SUPT20HL2P0C7V6 817 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 PPARDQ03181 441 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ITIH3Q06033 890 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 TTLL12Q14166 644 aaPredicted RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 LY6KQ17RY6 165 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ZBTB41Q5SVQ8 909 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 TMEM63BQ5T3F8 832 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 KRT39Q6A163 491 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 XRRA1Q6P2D8 792 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 C12orf56Q8IXR9 622 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 SAMD3Q8N6K7 520 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 KIFAP3Q92845 792 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 IWS1Q96ST2 819 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ATP6V0A4Q9HBG4 840 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ZNF302Q9NR11 478 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 CTTNBP2NLQ9P2B4 639 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ANKFY1Q9P2R3 1169 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 NOC2LQ9Y3T9 749 aaKnown RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 RNF40O75150 1001 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 KIF22Q14807 665 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 EMC2Q15006 297 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 IFI16Q16666 785 aaKnown RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 MIS18BP1Q6P0N0 1132 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 SULF1Q8IWU6 871 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ASAP3Q8TDY4 903 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 CASKIN2Q8WXE0 1202 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 RFFLQ8WZ73 363 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 ZBTB10Q96DT7 871 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 SENP7Q9BQF6 1050 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 NTPCRQ9BSD7 190 aaKnown RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 CELF4Q9BZC1 486 aaKnown RBP11.47□□□□□ -0.57
CUX1-217ENST00000558836 PDLIM7Q9NR12 457 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 AMACRQ9UHK6 382 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 PNMA2Q9UL42 364 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 CSADQ9Y600 493 aa11.47□□□□□ -0.57
CUX1-217ENST00000558836 KRIT1O00522 736 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 ATP2A1O14983 1001 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 CHRNB2P17787 502 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 UBA1P22314 1058 aaKnown RBP11.46□□□□□ -0.57
CUX1-217ENST00000558836 LIG4P49917 911 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 ALDH5A1P51649 535 aaPredicted RBP11.46□□□□□ -0.57
CUX1-217ENST00000558836 NLRP11P59045 1033 aaKnown RBP11.46□□□□□ -0.57
CUX1-217ENST00000558836 DCAF12L1Q5VU92 463 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms