RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MGAT1P26572 445 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 GPR15P49685 360 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 CD69Q07108 199 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 CCDC178Q5BJE1 867 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 CCDC62Q6P9F0 684 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 PIK3C3Q8NEB9 887 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 PPP1R14CQ8TAE6 165 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 NAF1Q96HR8 494 aaKnown RBP4.02□□□□□ -1.77
VPS13C-205ENST00000558088 COQ10AQ96MF6 247 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 CLUHP3Q96NS8 147 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 CDC5LQ99459 802 aaKnown RBP4.02□□□□□ -1.77
VPS13C-205ENST00000558088 RSAD1Q9HA92 442 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 INTS7Q9NVH2 962 aaKnown RBP4.02□□□□□ -1.77
VPS13C-205ENST00000558088 USP18Q9UMW8 372 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 B5MCH6 92 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 LY86O95711 162 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 ZFP36P26651 326 aaKnown RBP4.01□□□□□ -1.77
VPS13C-205ENST00000558088 BMPR1AP36894 532 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 RNASE9P60153 205 aaKnown RBP4.01□□□□□ -1.77
VPS13C-205ENST00000558088 FAM189BP81408 668 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 HNRNPA0Q13151 305 aaKnown RBP4.01□□□□□ -1.77
VPS13C-205ENST00000558088 LRRC32Q14392 662 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 SF3A1Q15459 793 aaKnown RBP4.01□□□□□ -1.77
VPS13C-205ENST00000558088 NFE2L2Q16236 605 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 LRCH2Q5VUJ6 765 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 TAS1R1Q7RTX1 841 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 GLB1L2Q8IW92 636 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 LILRB2Q8N423 598 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 EFHBQ8N7U6 833 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 GAB3Q8WWW8 586 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 LSM14BQ9BX40 385 aaKnown RBP4.01□□□□□ -1.77
VPS13C-205ENST00000558088 ZMAT4Q9H898 229 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 SYNPO2LQ9H987 977 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 POGKQ9P215 609 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 MAGEC2Q9UBF1 373 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-205ENST00000558088 COX11Q9Y6N1 276 aa4.01□□□□□ -1.77
VPS13C-205ENST00000558088 COL4A3Q01955 1670 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 CFBP00751 764 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 RBP3P10745 1247 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 ATP2A2P16615 1042 aaKnown RBP4□□□□□ -1.77
VPS13C-205ENST00000558088 DDX6P26196 483 aaKnown RBP eCLIP4□□□□□ -1.77
VPS13C-205ENST00000558088 CXCR5P32302 372 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 NHLH2Q02577 135 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 MGAT5Q09328 741 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 SART3Q15020 963 aaKnown RBP4□□□□□ -1.77
VPS13C-205ENST00000558088 BEAN1Q3B7T3 259 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 ARMC6Q6NXE6 501 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 EFCAB12Q6NXP0 572 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 DRICH1Q6PGQ1 229 aaPredicted RBP4□□□□□ -1.77
VPS13C-205ENST00000558088 XYLT1Q86Y38 959 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 KIF18BQ86Y91 864 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 LILRA3Q8N6C8 439 aaPredicted RBP4□□□□□ -1.77
VPS13C-205ENST00000558088 OR10H5Q8NGA6 315 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 SLC9A6Q92581 669 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 RNF181Q9P0P0 153 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 MSRAQ9UJ68 235 aa4□□□□□ -1.77
VPS13C-205ENST00000558088 LEFTY2O00292 366 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 PRAMEF4O60810 478 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 SEC24DO94855 1032 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 CLEC2LP0C7M8 214 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 ZNF37AP17032 561 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 NEK4P51957 841 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 KPNA1P52294 538 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 SEC24CP53992 1094 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 ELLP55199 621 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 OCRLQ01968 901 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 APBA1Q02410 837 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 PPARAQ07869 468 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 ABHD17BQ5VST6 288 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 CREB3L3Q68CJ9 461 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 FBXO42Q6P3S6 717 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 PDZD4Q76G19 769 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 HDGFL2Q7Z4V5 671 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 CPEB3Q8NE35 698 aaKnown RBP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 RSAD2Q8WXG1 361 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 OSBPL2Q9H1P3 480 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.99□□□□□ -1.77
VPS13C-205ENST00000558088 KCNG1Q9UIX4 513 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 CHST2Q9Y4C5 530 aa3.99□□□□□ -1.77
VPS13C-205ENST00000558088 PIPSLA2A3N6 862 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 UNC119BA6NIH7 251 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 ELL2O00472 640 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-205ENST00000558088 F2P00734 622 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 C1RP00736 705 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 PFKMP08237 780 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 ZSCAN20P17040 1043 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-205ENST00000558088 MEF2AQ02078 507 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-205ENST00000558088 GPRIN1Q7Z2K8 1008 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 NTN5Q8WTR8 489 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-205ENST00000558088 TFAP2CQ92754 450 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 MRFAP1L1Q96HT8 127 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 ORAI3Q9BRQ5 295 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 SPATA5L1Q9BVQ7 753 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 WNT8AQ9H1J5 351 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 R3HDMLQ9H3Y0 253 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 THG1LQ9NWX6 298 aaKnown RBP3.98□□□□□ -1.77
VPS13C-205ENST00000558088 SYBUQ9NX95 663 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 H2AFY2Q9P0M6 372 aaPredicted RBP3.98□□□□□ -1.77
VPS13C-205ENST00000558088 FPGT-TNNI3KV9GXZ4 949 aa3.98□□□□□ -1.77
VPS13C-205ENST00000558088 A0A1W2PR48 441 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms