RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 KANSL3Q9P2N6 904 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 IPPQ9Y573 584 aa11.77□□□□□ -0.53
LINC00239-201ENST00000556973 CARNS1A5YM72 827 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 FAM13AO94988 1023 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 NPTXRO95502 500 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 LAG3P18627 525 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 ABCD1P33897 745 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 ZNF131P52739 623 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 CACNB1Q02641 598 aaPredicted RBP11.76□□□□□ -0.53
LINC00239-201ENST00000556973 STRN3Q13033 797 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 CSPP1Q1MSJ5 1256 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 NOMO2Q5JPE7 1267 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 APBB1IPQ7Z5R6 666 aaPredicted RBP11.76□□□□□ -0.53
LINC00239-201ENST00000556973 CDR2LQ86X02 465 aaPredicted RBP11.76□□□□□ -0.53
LINC00239-201ENST00000556973 MYCT1Q8N699 235 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 PDILTQ8N807 584 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 IQUBQ8NA54 791 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 TMEM161BQ8NDZ6 487 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 GDPD5Q8WTR4 605 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 KCNN1Q92952 543 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 MRPL38Q96DV4 380 aaKnown RBP11.76□□□□□ -0.53
LINC00239-201ENST00000556973 LRRC27Q9C0I9 530 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 SCAND2PQ9GZW5 306 aaPredicted RBP11.76□□□□□ -0.53
LINC00239-201ENST00000556973 CUEDC2Q9H467 287 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 RSAD1Q9HA92 442 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 PARVGQ9HBI0 331 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 GIT1Q9Y2X7 761 aa11.76□□□□□ -0.53
LINC00239-201ENST00000556973 PLXNA4Q9HCM2 1894 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 A0A087X0B3 334 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 MYMKA6NI61 221 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 TTLL13PA6NNM8 815 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 MEIS3P2A8K0S8 358 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 TRAK2O60296 914 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 TBCAO75347 108 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 MAPTP10636 758 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 NCKAP1LP55160 1127 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 AMPD3Q01432 767 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 RNASELQ05823 741 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 NT5DC1Q5TFE4 455 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 ATF7IP2Q5U623 682 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 RESP18Q5W5W9 173 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 ADALQ6DHV7 355 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 KCNT2Q6UVM3 1135 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 DYMQ7RTS9 669 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 HAUS6Q7Z4H7 955 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 KLHL23Q8NBE8 558 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 COLGALT1Q8NBJ5 622 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 SLC17A8Q8NDX2 589 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 URGCPQ8TCY9 931 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 LEO1Q8WVC0 666 aaPredicted RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 DDX12PQ92771 950 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 ACO2Q99798 780 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 PYM1Q9BRP8 204 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 MRPL4Q9BYD3 311 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 LMAN2LQ9H0V9 348 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 RNF39Q9H2S5 420 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 ZHX3Q9H4I2 956 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 PDZD7Q9H5P4 517 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 PLAGL2Q9UPG8 496 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 TNFSF13BQ9Y275 285 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 HES2Q9Y543 173 aa11.75□□□□□ -0.53
LINC00239-201ENST00000556973 TDRD15B5MCY1 1934 aaKnown RBP11.75□□□□□ -0.53
LINC00239-201ENST00000556973 ARL5CA6NH57 179 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 GRM6O15303 877 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 INPPL1O15357 1258 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 POLR2DO15514 142 aaKnown RBP11.74□□□□□ -0.53
LINC00239-201ENST00000556973 ALDH2P05091 517 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 EDN1P05305 212 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 CMA1P23946 247 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 ALDH7A1P49419 539 aaKnown RBP11.74□□□□□ -0.53
LINC00239-201ENST00000556973 PLCB3Q01970 1234 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 KRT17Q04695 432 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 UBE3AQ05086 875 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 CCDC85BQ15834 202 aaPredicted RBP11.74□□□□□ -0.53
LINC00239-201ENST00000556973 E2F4Q16254 413 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 DCAF4L1Q3SXM0 396 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 ZPBP2Q6X784 338 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 TAS1R3Q7RTX0 852 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 THNSL1Q8IYQ7 743 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 SPPL3Q8TCT6 385 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 PPM1EQ8WY54 764 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 DHX58Q96C10 678 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 DNAJC19Q96DA6 116 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 ZNF558Q96NG5 402 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 FAM193BQ96PV7 902 aaPredicted RBP11.74□□□□□ -0.53
LINC00239-201ENST00000556973 APOL6Q9BWW8 343 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 TNMDQ9H2S6 317 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 NRDE2Q9H7Z3 1164 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 PTPRHQ9HD43 1115 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 ALG13Q9NP73 1137 aaKnown RBP11.74□□□□□ -0.53
LINC00239-201ENST00000556973 TBC1D13Q9NVG8 400 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 KBTBD4Q9NVX7 518 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 SEL1LQ9UBV2 794 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 PUF60Q9UHX1 559 aaKnown RBP11.74□□□□□ -0.53
LINC00239-201ENST00000556973 INPP5FQ9Y2H2 1132 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 USP20Q9Y2K6 914 aa11.74□□□□□ -0.53
LINC00239-201ENST00000556973 CHD9Q3L8U1 2897 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 FGF18O76093 207 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 POMCP01189 267 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 ITGB1P05556 798 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms